BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h23
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR8552c MIMAT0033866 Amborella trichopoda miR8552c 14 20
ssc-miR-4332 MIMAT0017962 Sus scrofa miR-4332 14 20
hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p 14 20
dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p 14 20
dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p 14 20
dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p 14 20
efu-miR-9209d MIMAT0034797 Eptesicus fuscus miR-9209d 12 80
ppc-miR-8226-5p MIMAT0032896 Pristionchus pacificus miR-8226-5p 12 80
ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p 12 80
ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p 12 80
prd-miR-7964b-5p MIMAT0030832 Panagrellus redivivus miR-7964b-5p 12 80
prd-miR-7964a-5p MIMAT0030828 Panagrellus redivivus miR-7964a-5p 12 80
mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p 12 80
mmu-miR-6241 MIMAT0024862 Mus musculus miR-6241 12 80
hsa-miR-6075 MIMAT0023700 Homo sapiens miR-6075 12 80
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597 12 80
hsa-miR-4485-3p MIMAT0019019 Homo sapiens miR-4485-3p 12 80
hsa-miR-4445-3p MIMAT0018964 Homo sapiens miR-4445-3p 12 80
hsa-miR-3177-3p MIMAT0015054 Homo sapiens miR-3177-3p 12 80
oan-miR-1382 MIMAT0007124 Ornithorhynchus anatinus miR-1382 12 80
dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p 12 80
cel-miR-53-3p MIMAT0020312 Caenorhabditis elegans miR-53-3p 12 80
>atr-miR8552c MIMAT0033866 Amborella trichopoda miR8552c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccgtg 7
|||||||
Sbjct: 1 ggccgtg 7
>ssc-miR-4332 MIMAT0017962 Sus scrofa miR-4332
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccgtg 7
|||||||
Sbjct: 7 ggccgtg 1
>hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccgtg 7
|||||||
Sbjct: 2 ggccgtg 8
>dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccgtg 7
|||||||
Sbjct: 2 ggccgtg 8
>dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccgtg 7
|||||||
Sbjct: 2 ggccgtg 8
>dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccgtg 7
|||||||
Sbjct: 2 ggccgtg 8
>efu-miR-9209d MIMAT0034797 Eptesicus fuscus miR-9209d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccgtg 7
||||||
Sbjct: 3 gccgtg 8
>ppc-miR-8226-5p MIMAT0032896 Pristionchus pacificus miR-8226-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccgt 6
||||||
Sbjct: 3 ggccgt 8
>ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccgt 6
||||||
Sbjct: 3 ggccgt 8
>ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccgtg 7
||||||
Sbjct: 1 gccgtg 6
>prd-miR-7964b-5p MIMAT0030832 Panagrellus redivivus
miR-7964b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccgtg 7
||||||
Sbjct: 3 gccgtg 8
>prd-miR-7964a-5p MIMAT0030828 Panagrellus redivivus
miR-7964a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccgtg 7
||||||
Sbjct: 3 gccgtg 8
>mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccgt 6
||||||
Sbjct: 6 ggccgt 1
>mmu-miR-6241 MIMAT0024862 Mus musculus miR-6241
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccgtg 7
||||||
Sbjct: 6 gccgtg 1
>hsa-miR-6075 MIMAT0023700 Homo sapiens miR-6075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccgt 6
||||||
Sbjct: 6 ggccgt 1
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccgtg 7
||||||
Sbjct: 3 gccgtg 8
>hsa-miR-4485-3p MIMAT0019019 Homo sapiens miR-4485-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccgt 6
||||||
Sbjct: 8 ggccgt 3
>hsa-miR-4445-3p MIMAT0018964 Homo sapiens miR-4445-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccgtg 7
||||||
Sbjct: 6 gccgtg 1
>hsa-miR-3177-3p MIMAT0015054 Homo sapiens miR-3177-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccgtg 7
||||||
Sbjct: 8 gccgtg 3
>oan-miR-1382 MIMAT0007124 Ornithorhynchus anatinus miR-1382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccgtg 7
||||||
Sbjct: 1 gccgtg 6
>dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccgt 6
||||||
Sbjct: 3 ggccgt 8
>cel-miR-53-3p MIMAT0020312 Caenorhabditis elegans miR-53-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccgtg 7
||||||
Sbjct: 6 gccgtg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 37
Number of extensions: 31
Number of successful extensions: 22
Number of sequences better than 100.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
