BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh94
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-551b-3p MIMAT0036943 Ophiophagus hannah miR-551b-3p 14 20
bbe-miR-2069-3p MIMAT0031635 Branchiostoma belcheri miR-2069-3p 14 20
mmu-miR-7228-5p MIMAT0028424 Mus musculus miR-7228-5p 14 20
ppy-miR-1181 MIMAT0016146 Pongo pygmaeus miR-1181 14 20
mtr-miR2613 MIMAT0013327 Medicago truncatula miR2613 14 20
bfl-miR-2069 MIMAT0009997 Branchiostoma floridae miR-2069 14 20
bta-miR-551b MIMAT0009348 Bos taurus miR-551b 14 20
rno-miR-551b-3p MIMAT0005596 Rattus norvegicus miR-551b-3p 14 20
cfa-miR-8828 MIMAT0034320 Canis familiaris miR-8828 12 80
gra-miR8700 MIMAT0034081 Gossypium raimondii miR8700 12 80
ppc-miR-8350-5p MIMAT0033252 Pristionchus pacificus miR-8350-5p 12 80
ppc-miR-8275-5p MIMAT0033049 Pristionchus pacificus miR-8275-5p 12 80
ppc-miR-8222-5p MIMAT0032878 Pristionchus pacificus miR-8222-5p 12 80
ssa-miR-551-3p MIMAT0032664 Salmo salar miR-551-3p 12 80
ipu-miR-551 MIMAT0029542 Ictalurus punctatus miR-551 12 80
ccr-miR-551 MIMAT0026329 Cyprinus carpio miR-551 12 80
ssc-miR-551a MIMAT0025379 Sus scrofa miR-551a 12 80
ggo-miR-1273c MIMAT0024289 Gorilla gorilla miR-1273c 12 80
ggo-miR-551b MIMAT0024188 Gorilla gorilla miR-551b 12 80
ggo-miR-551a MIMAT0024186 Gorilla gorilla miR-551a 12 80
osa-miR5809 MIMAT0023281 Oryza sativa miR5809 12 80
aca-miR-551 MIMAT0021982 Anolis carolinensis miR-551 12 80
hsa-miR-4670-5p MIMAT0019750 Homo sapiens miR-4670-5p 12 80
pma-miR-4556 MIMAT0019588 Petromyzon marinus miR-4556 12 80
pma-miR-551 MIMAT0019558 Petromyzon marinus miR-551 12 80
tca-miR-3899-3p MIMAT0018903 Tribolium castaneum miR-3899-3p 12 80
tca-miR-3864-5p MIMAT0018812 Tribolium castaneum miR-3864-5p 12 80
pab-miR3695 MIMAT0018127 Picea abies miR3695 12 80
ppy-miR-551b MIMAT0015998 Pongo pygmaeus miR-551b 12 80
ppy-miR-551a MIMAT0015997 Pongo pygmaeus miR-551a 12 80
hsa-miR-1273c MIMAT0015017 Homo sapiens miR-1273c 12 80
tgu-miR-551-3p MIMAT0014541 Taeniopygia guttata miR-551-3p 12 80
bta-miR-2892 MIMAT0013850 Bos taurus miR-2892 12 80
eca-miR-551b MIMAT0013094 Equus caballus miR-551b 12 80
eca-miR-551a MIMAT0012921 Equus caballus miR-551a 12 80
mdo-miR-551b-3p MIMAT0012764 Monodelphis domestica miR-551b-3p 12 80
mdo-miR-551a MIMAT0012763 Monodelphis domestica miR-551a 12 80
bmo-miR-2794 MIMAT0013694 Bombyx mori miR-2794 12 80
cfa-miR-551b MIMAT0009913 Canis familiaris miR-551b 12 80
cfa-miR-551a MIMAT0009912 Canis familiaris miR-551a 12 80
bta-miR-551a MIMAT0009347 Bos taurus miR-551a 12 80
ptr-miR-551b MIMAT0008232 Pan troglodytes miR-551b 12 80
ptr-miR-551a MIMAT0008231 Pan troglodytes miR-551a 12 80
ptr-miR-1181 MIMAT0007949 Pan troglodytes miR-1181 12 80
mml-miR-551b-3p MIMAT0006420 Macaca mulatta miR-551b-3p 12 80
mml-miR-551a MIMAT0006419 Macaca mulatta miR-551a 12 80
gga-miR-551-3p MIMAT0007290 Gallus gallus miR-551-3p 12 80
oan-miR-551-3p MIMAT0007130 Ornithorhynchus anatinus miR-551-3p 12 80
hsa-miR-1181 MIMAT0005826 Homo sapiens miR-1181 12 80
mmu-miR-551b-3p MIMAT0003890 Mus musculus miR-551b-3p 12 80
hsa-miR-551b-3p MIMAT0003233 Homo sapiens miR-551b-3p 12 80
hsa-miR-551a MIMAT0003214 Homo sapiens miR-551a 12 80
>oha-miR-551b-3p MIMAT0036943 Ophiophagus hannah miR-551b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgacc 7
|||||||
Sbjct: 1 ggcgacc 7
>bbe-miR-2069-3p MIMAT0031635 Branchiostoma belcheri miR-2069-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgacc 7
|||||||
Sbjct: 2 ggcgacc 8
>mmu-miR-7228-5p MIMAT0028424 Mus musculus miR-7228-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgacc 7
|||||||
Sbjct: 2 ggcgacc 8
>ppy-miR-1181 MIMAT0016146 Pongo pygmaeus miR-1181
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggcgacc 7
|||||||
Sbjct: 8 ggcgacc 2
>mtr-miR2613 MIMAT0013327 Medicago truncatula miR2613
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggcgacc 7
|||||||
Sbjct: 8 ggcgacc 2
>bfl-miR-2069 MIMAT0009997 Branchiostoma floridae miR-2069
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgacc 7
|||||||
Sbjct: 2 ggcgacc 8
>bta-miR-551b MIMAT0009348 Bos taurus miR-551b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgacc 7
|||||||
Sbjct: 1 ggcgacc 7
>rno-miR-551b-3p MIMAT0005596 Rattus norvegicus miR-551b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgacc 7
|||||||
Sbjct: 1 ggcgacc 7
>cfa-miR-8828 MIMAT0034320 Canis familiaris miR-8828
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>gra-miR8700 MIMAT0034081 Gossypium raimondii miR8700
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 3 ggcgac 8
>ppc-miR-8350-5p MIMAT0033252 Pristionchus pacificus miR-8350-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>ppc-miR-8275-5p MIMAT0033049 Pristionchus pacificus miR-8275-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>ppc-miR-8222-5p MIMAT0032878 Pristionchus pacificus miR-8222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 3 ggcgac 8
>ssa-miR-551-3p MIMAT0032664 Salmo salar miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ipu-miR-551 MIMAT0029542 Ictalurus punctatus miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ccr-miR-551 MIMAT0026329 Cyprinus carpio miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ssc-miR-551a MIMAT0025379 Sus scrofa miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ggo-miR-1273c MIMAT0024289 Gorilla gorilla miR-1273c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>ggo-miR-551b MIMAT0024188 Gorilla gorilla miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ggo-miR-551a MIMAT0024186 Gorilla gorilla miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>osa-miR5809 MIMAT0023281 Oryza sativa miR5809
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcgac 6
||||||
Sbjct: 8 ggcgac 3
>aca-miR-551 MIMAT0021982 Anolis carolinensis miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>hsa-miR-4670-5p MIMAT0019750 Homo sapiens miR-4670-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 3 gcgacc 8
>pma-miR-4556 MIMAT0019588 Petromyzon marinus miR-4556
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 3 gcgacc 8
>pma-miR-551 MIMAT0019558 Petromyzon marinus miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>tca-miR-3899-3p MIMAT0018903 Tribolium castaneum miR-3899-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>tca-miR-3864-5p MIMAT0018812 Tribolium castaneum miR-3864-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>pab-miR3695 MIMAT0018127 Picea abies miR3695
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcgac 6
||||||
Sbjct: 8 ggcgac 3
>ppy-miR-551b MIMAT0015998 Pongo pygmaeus miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ppy-miR-551a MIMAT0015997 Pongo pygmaeus miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>hsa-miR-1273c MIMAT0015017 Homo sapiens miR-1273c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>tgu-miR-551-3p MIMAT0014541 Taeniopygia guttata miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>bta-miR-2892 MIMAT0013850 Bos taurus miR-2892
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 1 ggcgac 6
>eca-miR-551b MIMAT0013094 Equus caballus miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>eca-miR-551a MIMAT0012921 Equus caballus miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>mdo-miR-551b-3p MIMAT0012764 Monodelphis domestica miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>mdo-miR-551a MIMAT0012763 Monodelphis domestica miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>bmo-miR-2794 MIMAT0013694 Bombyx mori miR-2794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcgac 6
||||||
Sbjct: 3 ggcgac 8
>cfa-miR-551b MIMAT0009913 Canis familiaris miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>cfa-miR-551a MIMAT0009912 Canis familiaris miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>bta-miR-551a MIMAT0009347 Bos taurus miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ptr-miR-551b MIMAT0008232 Pan troglodytes miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ptr-miR-551a MIMAT0008231 Pan troglodytes miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>ptr-miR-1181 MIMAT0007949 Pan troglodytes miR-1181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcgac 6
||||||
Sbjct: 8 ggcgac 3
>mml-miR-551b-3p MIMAT0006420 Macaca mulatta miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>mml-miR-551a MIMAT0006419 Macaca mulatta miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>gga-miR-551-3p MIMAT0007290 Gallus gallus miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>oan-miR-551-3p MIMAT0007130 Ornithorhynchus anatinus miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>hsa-miR-1181 MIMAT0005826 Homo sapiens miR-1181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcgac 6
||||||
Sbjct: 8 ggcgac 3
>mmu-miR-551b-3p MIMAT0003890 Mus musculus miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>hsa-miR-551b-3p MIMAT0003233 Homo sapiens miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
>hsa-miR-551a MIMAT0003214 Homo sapiens miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgacc 7
||||||
Sbjct: 1 gcgacc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 66
Number of extensions: 58
Number of successful extensions: 52
Number of sequences better than 100.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
