BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-106947b
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
isc-miR-5311 MIMAT0021382 Ixodes scapularis miR-5311 14 20
dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster miR-4948-5p 14 20
hsa-miR-4707-3p MIMAT0019808 Homo sapiens miR-4707-3p 14 20
bta-miR-2899 MIMAT0013857 Bos taurus miR-2899 14 20
ata-miR168-3p MIMAT0037153 Aegilops tauschii miR168-3p 12 80
bra-miR168a-3p MIMAT0035837 Brassica rapa miR168a-3p 12 80
bra-miR168c-3p MIMAT0035835 Brassica rapa miR168c-3p 12 80
bra-miR168b-3p MIMAT0035833 Brassica rapa miR168b-3p 12 80
ppc-miR-8285-5p MIMAT0033075 Pristionchus pacificus miR-8285-5p 12 80
ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p 12 80
mmu-miR-7671-3p MIMAT0029849 Mus musculus miR-7671-3p 12 80
sly-miR168b-3p MIMAT0031132 Solanum lycopersicum miR168b-3p 12 80
oan-miR-7425-3p MIMAT0029001 Ornithorhynchus anatinus miR-7425-3p 12 80
mtr-miR168c-3p MIMAT0022236 Medicago truncatula miR168c-3p 12 80
bdi-miR168-3p MIMAT0027053 Brachypodium distachyon miR168-3p 12 80
mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126 12 80
hsa-miR-3656 MIMAT0018076 Homo sapiens miR-3656 12 80
rno-miR-3584-3p MIMAT0017876 Rattus norvegicus miR-3584-3p 12 80
ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471 12 80
aly-miR168a-3p MIMAT0017482 Arabidopsis lyrata miR168a-3p 12 80
hsv1-miR-H18 MIMAT0014696 Herpes Simplex miR-H18 12 80
bta-miR-2900 MIMAT0013858 Bos taurus miR-2900 12 80
bta-miR-2881 MIMAT0013839 Bos taurus miR-2881 12 80
bta-miR-2436-3p MIMAT0012009 Bos taurus miR-2436-3p 12 80
bta-miR-2419-3p MIMAT0011986 Bos taurus miR-2419-3p 12 80
hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471 12 80
ptc-miR168b-3p MIMAT0022897 Populus trichocarpa miR168b-3p 12 80
ptc-miR168a-3p MIMAT0022896 Populus trichocarpa miR168a-3p 12 80
zma-miR168b-3p MIMAT0015192 Zea mays miR168b-3p 12 80
zma-miR168a-3p MIMAT0015191 Zea mays miR168a-3p 12 80
dme-miR-310-5p MIMAT0020836 Drosophila melanogaster miR-310-5p 12 80
cel-miR-264 MIMAT0000320 Caenorhabditis elegans miR-264 12 80
ath-miR168a-3p MIMAT0031884 Arabidopsis thaliana miR168a-3p 12 80
>isc-miR-5311 MIMAT0021382 Ixodes scapularis miR-5311
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggcgggc 7
|||||||
Sbjct: 8 ggcgggc 2
>dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster
miR-4948-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgggc 7
|||||||
Sbjct: 2 ggcgggc 8
>hsa-miR-4707-3p MIMAT0019808 Homo sapiens miR-4707-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggcgggc 7
|||||||
Sbjct: 8 ggcgggc 2
>bta-miR-2899 MIMAT0013857 Bos taurus miR-2899
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcgggc 7
|||||||
Sbjct: 2 ggcgggc 8
>ata-miR168-3p MIMAT0037153 Aegilops tauschii miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>bra-miR168a-3p MIMAT0035837 Brassica rapa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>bra-miR168c-3p MIMAT0035835 Brassica rapa miR168c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>bra-miR168b-3p MIMAT0035833 Brassica rapa miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>ppc-miR-8285-5p MIMAT0033075 Pristionchus pacificus miR-8285-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgggc 7
||||||
Sbjct: 8 gcgggc 3
>mmu-miR-7671-3p MIMAT0029849 Mus musculus miR-7671-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgggc 7
||||||
Sbjct: 3 gcgggc 8
>sly-miR168b-3p MIMAT0031132 Solanum lycopersicum miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>oan-miR-7425-3p MIMAT0029001 Ornithorhynchus anatinus
miR-7425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 3 ggcggg 8
>mtr-miR168c-3p MIMAT0022236 Medicago truncatula miR168c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>bdi-miR168-3p MIMAT0027053 Brachypodium distachyon miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgggc 7
||||||
Sbjct: 1 gcgggc 6
>hsa-miR-3656 MIMAT0018076 Homo sapiens miR-3656
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 1 ggcggg 6
>rno-miR-3584-3p MIMAT0017876 Rattus norvegicus miR-3584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgggc 7
||||||
Sbjct: 6 gcgggc 1
>ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgggc 7
||||||
Sbjct: 6 gcgggc 1
>aly-miR168a-3p MIMAT0017482 Arabidopsis lyrata miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>hsv1-miR-H18 MIMAT0014696 Herpes Simplex miR-H18
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>bta-miR-2900 MIMAT0013858 Bos taurus miR-2900
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 3 ggcggg 8
>bta-miR-2881 MIMAT0013839 Bos taurus miR-2881
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 3 ggcggg 8
>bta-miR-2436-3p MIMAT0012009 Bos taurus miR-2436-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>bta-miR-2419-3p MIMAT0011986 Bos taurus miR-2419-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 3 ggcggg 8
>hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgggc 7
||||||
Sbjct: 6 gcgggc 1
>ptc-miR168b-3p MIMAT0022897 Populus trichocarpa miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>ptc-miR168a-3p MIMAT0022896 Populus trichocarpa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>zma-miR168b-3p MIMAT0015192 Zea mays miR168b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>zma-miR168a-3p MIMAT0015191 Zea mays miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
>dme-miR-310-5p MIMAT0020836 Drosophila melanogaster miR-310-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 3 ggcggg 8
>cel-miR-264 MIMAT0000320 Caenorhabditis elegans miR-264
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggcggg 6
||||||
Sbjct: 1 ggcggg 6
>ath-miR168a-3p MIMAT0031884 Arabidopsis thaliana miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggcggg 6
||||||
Sbjct: 6 ggcggg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 51
Number of successful extensions: 33
Number of sequences better than 100.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)