BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-orilyt-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-4867-3p MIMAT0031691 Branchiostoma belcheri miR-4867-3p 14 20
bfl-miR-4867 MIMAT0020103 Branchiostoma floridae miR-4867 14 20
cte-miR-2714 MIMAT0013583 Capitella teleta miR-2714 14 20
tae-miR9660-5p MIMAT0035768 Triticum aestivum miR9660-5p 12 80
dvi-miR-974-2-5p MIMAT0035645 Drosophila virilis miR-974-2-5p 12 80
dvi-miR-974-1-5p MIMAT0035644 Drosophila virilis miR-974-1-5p 12 80
nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458 12 80
eca-miR-9183 MIMAT0034764 Equus caballus miR-9183 12 80
cel-miR-8211-3p MIMAT0032843 Caenorhabditis elegans miR-8211-3p 12 80
ppe-miR171d-3p MIMAT0031467 Prunus persica miR171d-3p 12 80
mdo-miR-7376-3p MIMAT0028809 Monodelphis domestica miR-7376-3p 12 80
mdo-miR-7328-5p MIMAT0028658 Monodelphis domestica miR-7328-5p 12 80
sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p 12 80
blv-miR-B5-3p MIMAT0025866 Bovine leukemia miR-B5-3p 12 80
gga-miR-6596-5p MIMAT0025690 Gallus gallus miR-6596-5p 12 80
mml-miR-2114 MIMAT0024345 Macaca mulatta miR-2114 12 80
ptr-miR-2114 MIMAT0024072 Pan troglodytes miR-2114 12 80
cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p 12 80
gma-miR171s MIMAT0023234 Glycine max miR171s 12 80
gma-miR171r MIMAT0023229 Glycine max miR171r 12 80
mtr-miR171g MIMAT0023132 Medicago truncatula miR171g 12 80
mtr-miR171h MIMAT0021269 Medicago truncatula miR171h 12 80
ssc-miR-615 MIMAT0020595 Sus scrofa miR-615 12 80
pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573 12 80
pma-miR-4565 MIMAT0019597 Petromyzon marinus miR-4565 12 80
csi-miR171b MIMAT0018455 Citrus sinensis miR171b 12 80
cin-miR-4018a-3p MIMAT0016529 Ciona intestinalis miR-4018a-3p 12 80
ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p 12 80
ath-miR841b-5p MIMAT0017741 Arabidopsis thaliana miR841b-5p 12 80
eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p 12 80
bta-miR-2373-3p MIMAT0011919 Bos taurus miR-2373-3p 12 80
hsa-miR-2114-3p MIMAT0011157 Homo sapiens miR-2114-3p 12 80
ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615 12 80
mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p 12 80
gga-miR-1581 MIMAT0007442 Gallus gallus miR-1581 12 80
gma-miR171b-3p MIMAT0007363 Glycine max miR171b-3p 12 80
ptc-miR171j MIMAT0005996 Populus trichocarpa miR171j 12 80
ptc-miR171m MIMAT0005995 Populus trichocarpa miR171m 12 80
ptc-miR171l-3p MIMAT0005994 Populus trichocarpa miR171l-3p 12 80
oan-miR-1363-3p MIMAT0007026 Ornithorhynchus anatinus miR-1363-3p 12 80
tae-miR1129 MIMAT0005364 Triticum aestivum miR1129 12 80
dme-miR-974-5p MIMAT0005490 Drosophila melanogaster miR-974-5p 12 80
ath-miR841a-5p MIMAT0004263 Arabidopsis thaliana miR841a-5p 12 80
mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p 12 80
hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p 12 80
mml-miR-99a-3p MIMAT0026579 Macaca mulatta miR-99a-3p 12 80
zma-miR156k-3p MIMAT0015208 Zea mays miR156k-3p 12 80
osa-miR156j-3p MIMAT0022850 Oryza sativa miR156j-3p 12 80
>bbe-miR-4867-3p MIMAT0031691 Branchiostoma belcheri miR-4867-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctcgc 7
|||||||
Sbjct: 8 ggctcgc 2
>bfl-miR-4867 MIMAT0020103 Branchiostoma floridae miR-4867
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctcgc 7
|||||||
Sbjct: 8 ggctcgc 2
>cte-miR-2714 MIMAT0013583 Capitella teleta miR-2714
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctcgc 7
|||||||
Sbjct: 8 ggctcgc 2
>tae-miR9660-5p MIMAT0035768 Triticum aestivum miR9660-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>dvi-miR-974-2-5p MIMAT0035645 Drosophila virilis miR-974-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>dvi-miR-974-1-5p MIMAT0035644 Drosophila virilis miR-974-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>eca-miR-9183 MIMAT0034764 Equus caballus miR-9183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctcg 6
||||||
Sbjct: 3 ggctcg 8
>cel-miR-8211-3p MIMAT0032843 Caenorhabditis elegans miR-8211-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctcg 6
||||||
Sbjct: 3 ggctcg 8
>ppe-miR171d-3p MIMAT0031467 Prunus persica miR171d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>mdo-miR-7376-3p MIMAT0028809 Monodelphis domestica miR-7376-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctcgc 7
||||||
Sbjct: 3 gctcgc 8
>mdo-miR-7328-5p MIMAT0028658 Monodelphis domestica miR-7328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctcg 6
||||||
Sbjct: 3 ggctcg 8
>sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>blv-miR-B5-3p MIMAT0025866 Bovine leukemia miR-B5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>gga-miR-6596-5p MIMAT0025690 Gallus gallus miR-6596-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>mml-miR-2114 MIMAT0024345 Macaca mulatta miR-2114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>ptr-miR-2114 MIMAT0024072 Pan troglodytes miR-2114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>gma-miR171s MIMAT0023234 Glycine max miR171s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>gma-miR171r MIMAT0023229 Glycine max miR171r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>mtr-miR171g MIMAT0023132 Medicago truncatula miR171g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>mtr-miR171h MIMAT0021269 Medicago truncatula miR171h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>ssc-miR-615 MIMAT0020595 Sus scrofa miR-615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctcgc 7
||||||
Sbjct: 1 gctcgc 6
>pma-miR-4565 MIMAT0019597 Petromyzon marinus miR-4565
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>csi-miR171b MIMAT0018455 Citrus sinensis miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>cin-miR-4018a-3p MIMAT0016529 Ciona intestinalis miR-4018a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctcgc 7
||||||
Sbjct: 1 gctcgc 6
>ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>ath-miR841b-5p MIMAT0017741 Arabidopsis thaliana miR841b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>bta-miR-2373-3p MIMAT0011919 Bos taurus miR-2373-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>hsa-miR-2114-3p MIMAT0011157 Homo sapiens miR-2114-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>gga-miR-1581 MIMAT0007442 Gallus gallus miR-1581
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>gma-miR171b-3p MIMAT0007363 Glycine max miR171b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>ptc-miR171j MIMAT0005996 Populus trichocarpa miR171j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>ptc-miR171m MIMAT0005995 Populus trichocarpa miR171m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>ptc-miR171l-3p MIMAT0005994 Populus trichocarpa miR171l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 6 ggctcg 1
>oan-miR-1363-3p MIMAT0007026 Ornithorhynchus anatinus
miR-1363-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>tae-miR1129 MIMAT0005364 Triticum aestivum miR1129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>dme-miR-974-5p MIMAT0005490 Drosophila melanogaster miR-974-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctcgc 7
||||||
Sbjct: 8 gctcgc 3
>ath-miR841a-5p MIMAT0004263 Arabidopsis thaliana miR841a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctcg 6
||||||
Sbjct: 8 ggctcg 3
>mml-miR-99a-3p MIMAT0026579 Macaca mulatta miR-99a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctcgc 7
||||||
Sbjct: 3 gctcgc 8
>zma-miR156k-3p MIMAT0015208 Zea mays miR156k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctcgc 7
||||||
Sbjct: 1 gctcgc 6
>osa-miR156j-3p MIMAT0022850 Oryza sativa miR156j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctcgc 7
||||||
Sbjct: 1 gctcgc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 67
Number of extensions: 64
Number of successful extensions: 48
Number of sequences better than 100.0: 48
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 48
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
