BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b3rc-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-1842 MIMAT0036969 Bos taurus miR-1842 14 20
hbv-miR-B3RC-3p MIMAT0031765 Herpes B miR-B3RC-3p 14 20
mmu-miR-7239-3p MIMAT0028447 Mus musculus miR-7239-3p 14 20
gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p 14 20
ggo-miR-760 MIMAT0024132 Gorilla gorilla miR-760 14 20
ppy-miR-760 MIMAT0016104 Pongo pygmaeus miR-760 14 20
aly-miR845a-3p MIMAT0017632 Arabidopsis lyrata miR845a-3p 14 20
bmo-miR-3256 MIMAT0015439 Bombyx mori miR-3256 14 20
eca-miR-1842 MIMAT0013055 Equus caballus miR-1842 14 20
mml-miR-760 MIMAT0012788 Macaca mulatta miR-760 14 20
bmo-miR-306a-3p MIMAT0015303 Bombyx mori miR-306a-3p 14 20
cbr-miR-235b-5p MIMAT0011473 Caenorhabditis briggsae miR-235b-5p 14 20
bta-miR-760-3p MIMAT0022951 Bos taurus miR-760-3p 14 20
ptr-miR-760 MIMAT0008319 Pan troglodytes miR-760 14 20
cfa-miR-1842 MIMAT0006701 Canis familiaris miR-1842 14 20
vvi-miR845e MIMAT0006583 Vitis vinifera miR845e 14 20
vvi-miR845d MIMAT0006582 Vitis vinifera miR845d 14 20
vvi-miR845c MIMAT0006581 Vitis vinifera miR845c 14 20
rno-miR-760-3p MIMAT0005337 Rattus norvegicus miR-760-3p 14 20
hsa-miR-760 MIMAT0004957 Homo sapiens miR-760 14 20
ath-miR845a MIMAT0004268 Arabidopsis thaliana miR845a 14 20
mmu-miR-760-3p MIMAT0003898 Mus musculus miR-760-3p 14 20
oha-miR-301a-5p MIMAT0036884 Ophiophagus hannah miR-301a-5p 12 80
oha-miR-301b-5p MIMAT0036882 Ophiophagus hannah miR-301b-5p 12 80
chi-miR-301a-5p MIMAT0036118 Capra hircus miR-301a-5p 12 80
efu-miR-1842 MIMAT0035137 Eptesicus fuscus miR-1842 12 80
efu-miR-9319 MIMAT0035009 Eptesicus fuscus miR-9319 12 80
eca-miR-9172 MIMAT0034752 Equus caballus miR-9172 12 80
eca-miR-8975 MIMAT0034512 Equus caballus miR-8975 12 80
bta-miR-8550 MIMAT0033821 Bos taurus miR-8550 12 80
ppc-miR-8268-5p MIMAT0033022 Pristionchus pacificus miR-8268-5p 12 80
cel-miR-2217b-1-5p MIMAT0032839 Caenorhabditis elegans miR-2217b... 12 80
bbe-miR-4888-5p MIMAT0031705 Branchiostoma belcheri miR-4888-5p 12 80
mmu-miR-1291 MIMAT0031397 Mus musculus miR-1291 12 80
hsa-miR-8057 MIMAT0030984 Homo sapiens miR-8057 12 80
prd-miR-7909-3p MIMAT0030635 Panagrellus redivivus miR-7909-3p 12 80
mmu-miR-7689-3p MIMAT0029909 Mus musculus miR-7689-3p 12 80
oan-miR-7410-5p MIMAT0028966 Ornithorhynchus anatinus miR-7410-5p 12 80
oan-miR-7403-5p MIMAT0028948 Ornithorhynchus anatinus miR-7403-5p 12 80
mdo-miR-7331-2-3p MIMAT0031091 Monodelphis domestica miR-7331-2-3p 12 80
mdo-miR-7331-1-3p MIMAT0028669 Monodelphis domestica miR-7331-1-3p 12 80
cme-miR845 MIMAT0026084 Cucumis melo miR845 12 80
mmu-miR-7070-3p MIMAT0028047 Mus musculus miR-7070-3p 12 80
mmu-miR-7052-3p MIMAT0028009 Mus musculus miR-7052-3p 12 80
hsa-miR-6805-3p MIMAT0027511 Homo sapiens miR-6805-3p 12 80
hsa-miR-6741-3p MIMAT0027384 Homo sapiens miR-6741-3p 12 80
gga-miR-6703-3p MIMAT0025813 Gallus gallus miR-6703-3p 12 80
gga-miR-6616-5p MIMAT0025712 Gallus gallus miR-6616-5p 12 80
pde-miR952b MIMAT0025345 Pinus densata miR952b 12 80
pde-miR952a MIMAT0025344 Pinus densata miR952a 12 80
bmo-miR-6497-5p MIMAT0025321 Bombyx mori miR-6497-5p 12 80
hvu-miR6198 MIMAT0024824 Hordeum vulgare miR6198 12 80
ppy-miR-3155a MIMAT0024368 Pongo pygmaeus miR-3155a 12 80
cgr-miR-301a-5p MIMAT0023890 Cricetulus griseus miR-301a-5p 12 80
ola-miR-301a-5p MIMAT0022620 Oryzias latipes miR-301a-5p 12 80
ola-miR-301b-5p MIMAT0022610 Oryzias latipes miR-301b-5p 12 80
hsa-miR-5691 MIMAT0022483 Homo sapiens miR-5691 12 80
sbi-miR5568a MIMAT0022248 Sorghum bicolor miR5568a 12 80
aca-miR-301b-5p MIMAT0021917 Anolis carolinensis miR-301b-5p 12 80
aca-miR-301a-5p MIMAT0021915 Anolis carolinensis miR-301a-5p 12 80
mtr-miR5295d MIMAT0021366 Medicago truncatula miR5295d 12 80
mtr-miR5295c MIMAT0021365 Medicago truncatula miR5295c 12 80
mtr-miR5295b MIMAT0021364 Medicago truncatula miR5295b 12 80
mtr-miR5295a MIMAT0021363 Medicago truncatula miR5295a 12 80
gma-miR5032 MIMAT0021052 Glycine max miR5032 12 80
bfl-miR-4888 MIMAT0020475 Branchiostoma floridae miR-4888 12 80
ssc-miR-4339 MIMAT0017980 Sus scrofa miR-4339 12 80
cin-miR-4094-5p MIMAT0016674 Ciona intestinalis miR-4094-5p 12 80
rno-miR-3542 MIMAT0017796 Rattus norvegicus miR-3542 12 80
gga-miR-3530-5p MIMAT0027029 Gallus gallus miR-3530-5p 12 80
aly-miR845b-3p MIMAT0017634 Arabidopsis lyrata miR845b-3p 12 80
mmu-miR-3104-3p MIMAT0014940 Mus musculus miR-3104-3p 12 80
mmu-miR-344g-3p MIMAT0014930 Mus musculus miR-344g-3p 12 80
tgu-miR-301-5p MIMAT0017391 Taeniopygia guttata miR-301-5p 12 80
tgu-miR-1803-5p MIMAT0026965 Taeniopygia guttata miR-1803-5p 12 80
bta-miR-2397-3p MIMAT0011952 Bos taurus miR-2397-3p 12 80
osa-miR2094-3p MIMAT0010053 Oryza sativa miR2094-3p 12 80
osa-miR1871 MIMAT0007824 Oryza sativa miR1871 12 80
vvi-miR845b MIMAT0006580 Vitis vinifera miR845b 12 80
vvi-miR845a MIMAT0006579 Vitis vinifera miR845a 12 80
gga-miR-301b-5p MIMAT0007741 Gallus gallus miR-301b-5p 12 80
gga-miR-1749-3p MIMAT0007655 Gallus gallus miR-1749-3p 12 80
gga-miR-1746 MIMAT0007651 Gallus gallus miR-1746 12 80
gga-miR-1741 MIMAT0007645 Gallus gallus miR-1741 12 80
gga-miR-1602 MIMAT0007468 Gallus gallus miR-1602 12 80
oan-miR-301-5p MIMAT0006909 Ornithorhynchus anatinus miR-301-5p 12 80
rno-miR-301b-5p MIMAT0017300 Rattus norvegicus miR-301b-5p 12 80
pta-miR952a MIMAT0005013 Pinus taeda miR952a 12 80
hsa-miR-301b-5p MIMAT0032026 Homo sapiens miR-301b-5p 12 80
ath-miR845b MIMAT0004317 Arabidopsis thaliana miR845b 12 80
mmu-miR-301b-5p MIMAT0017232 Mus musculus miR-301b-5p 12 80
dre-miR-301c-5p MIMAT0031991 Danio rerio miR-301c-5p 12 80
ath-miR415 MIMAT0001323 Arabidopsis thaliana miR415 12 80
hsa-miR-301a-5p MIMAT0022696 Homo sapiens miR-301a-5p 12 80
rno-miR-301a-5p MIMAT0017026 Rattus norvegicus miR-301a-5p 12 80
mmu-miR-301a-5p MIMAT0017008 Mus musculus miR-301a-5p 12 80
>bta-miR-1842 MIMAT0036969 Bos taurus miR-1842
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>hbv-miR-B3RC-3p MIMAT0031765 Herpes B miR-B3RC-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>mmu-miR-7239-3p MIMAT0028447 Mus musculus miR-7239-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>gga-miR-6683-3p MIMAT0025788 Gallus gallus miR-6683-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctctg 7
|||||||
Sbjct: 8 ggctctg 2
>ggo-miR-760 MIMAT0024132 Gorilla gorilla miR-760
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>ppy-miR-760 MIMAT0016104 Pongo pygmaeus miR-760
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>aly-miR845a-3p MIMAT0017632 Arabidopsis lyrata miR845a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>bmo-miR-3256 MIMAT0015439 Bombyx mori miR-3256
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>eca-miR-1842 MIMAT0013055 Equus caballus miR-1842
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>mml-miR-760 MIMAT0012788 Macaca mulatta miR-760
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>bmo-miR-306a-3p MIMAT0015303 Bombyx mori miR-306a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctctg 7
|||||||
Sbjct: 7 ggctctg 1
>cbr-miR-235b-5p MIMAT0011473 Caenorhabditis briggsae
miR-235b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>bta-miR-760-3p MIMAT0022951 Bos taurus miR-760-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>ptr-miR-760 MIMAT0008319 Pan troglodytes miR-760
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>cfa-miR-1842 MIMAT0006701 Canis familiaris miR-1842
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>vvi-miR845e MIMAT0006583 Vitis vinifera miR845e
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>vvi-miR845d MIMAT0006582 Vitis vinifera miR845d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>vvi-miR845c MIMAT0006581 Vitis vinifera miR845c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>rno-miR-760-3p MIMAT0005337 Rattus norvegicus miR-760-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>hsa-miR-760 MIMAT0004957 Homo sapiens miR-760
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>ath-miR845a MIMAT0004268 Arabidopsis thaliana miR845a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>mmu-miR-760-3p MIMAT0003898 Mus musculus miR-760-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctctg 7
|||||||
Sbjct: 2 ggctctg 8
>oha-miR-301a-5p MIMAT0036884 Ophiophagus hannah miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>oha-miR-301b-5p MIMAT0036882 Ophiophagus hannah miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>chi-miR-301a-5p MIMAT0036118 Capra hircus miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>efu-miR-1842 MIMAT0035137 Eptesicus fuscus miR-1842
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>efu-miR-9319 MIMAT0035009 Eptesicus fuscus miR-9319
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>eca-miR-9172 MIMAT0034752 Equus caballus miR-9172
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>eca-miR-8975 MIMAT0034512 Equus caballus miR-8975
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>bta-miR-8550 MIMAT0033821 Bos taurus miR-8550
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>ppc-miR-8268-5p MIMAT0033022 Pristionchus pacificus miR-8268-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 1 ggctct 6
>cel-miR-2217b-1-5p MIMAT0032839 Caenorhabditis elegans
miR-2217b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 6 gctctg 1
>bbe-miR-4888-5p MIMAT0031705 Branchiostoma belcheri miR-4888-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>mmu-miR-1291 MIMAT0031397 Mus musculus miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>hsa-miR-8057 MIMAT0030984 Homo sapiens miR-8057
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>prd-miR-7909-3p MIMAT0030635 Panagrellus redivivus miR-7909-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>mmu-miR-7689-3p MIMAT0029909 Mus musculus miR-7689-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctct 6
||||||
Sbjct: 8 ggctct 3
>oan-miR-7410-5p MIMAT0028966 Ornithorhynchus anatinus
miR-7410-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>oan-miR-7403-5p MIMAT0028948 Ornithorhynchus anatinus
miR-7403-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 7 gctctg 2
>mdo-miR-7331-2-3p MIMAT0031091 Monodelphis domestica
miR-7331-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 1 ggctct 6
>mdo-miR-7331-1-3p MIMAT0028669 Monodelphis domestica
miR-7331-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 1 ggctct 6
>cme-miR845 MIMAT0026084 Cucumis melo miR845
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>mmu-miR-7070-3p MIMAT0028047 Mus musculus miR-7070-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>mmu-miR-7052-3p MIMAT0028009 Mus musculus miR-7052-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>hsa-miR-6805-3p MIMAT0027511 Homo sapiens miR-6805-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>hsa-miR-6741-3p MIMAT0027384 Homo sapiens miR-6741-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>gga-miR-6703-3p MIMAT0025813 Gallus gallus miR-6703-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 6 gctctg 1
>gga-miR-6616-5p MIMAT0025712 Gallus gallus miR-6616-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>pde-miR952b MIMAT0025345 Pinus densata miR952b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>pde-miR952a MIMAT0025344 Pinus densata miR952a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>bmo-miR-6497-5p MIMAT0025321 Bombyx mori miR-6497-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>hvu-miR6198 MIMAT0024824 Hordeum vulgare miR6198
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>ppy-miR-3155a MIMAT0024368 Pongo pygmaeus miR-3155a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>cgr-miR-301a-5p MIMAT0023890 Cricetulus griseus miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>ola-miR-301a-5p MIMAT0022620 Oryzias latipes miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>ola-miR-301b-5p MIMAT0022610 Oryzias latipes miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>hsa-miR-5691 MIMAT0022483 Homo sapiens miR-5691
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>sbi-miR5568a MIMAT0022248 Sorghum bicolor miR5568a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 6 gctctg 1
>aca-miR-301b-5p MIMAT0021917 Anolis carolinensis miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>aca-miR-301a-5p MIMAT0021915 Anolis carolinensis miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>mtr-miR5295d MIMAT0021366 Medicago truncatula miR5295d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>mtr-miR5295c MIMAT0021365 Medicago truncatula miR5295c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>mtr-miR5295b MIMAT0021364 Medicago truncatula miR5295b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>mtr-miR5295a MIMAT0021363 Medicago truncatula miR5295a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>gma-miR5032 MIMAT0021052 Glycine max miR5032
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctct 6
||||||
Sbjct: 6 ggctct 1
>bfl-miR-4888 MIMAT0020475 Branchiostoma floridae miR-4888
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>ssc-miR-4339 MIMAT0017980 Sus scrofa miR-4339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>cin-miR-4094-5p MIMAT0016674 Ciona intestinalis miR-4094-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>rno-miR-3542 MIMAT0017796 Rattus norvegicus miR-3542
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>gga-miR-3530-5p MIMAT0027029 Gallus gallus miR-3530-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>aly-miR845b-3p MIMAT0017634 Arabidopsis lyrata miR845b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>mmu-miR-3104-3p MIMAT0014940 Mus musculus miR-3104-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>mmu-miR-344g-3p MIMAT0014930 Mus musculus miR-344g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>tgu-miR-301-5p MIMAT0017391 Taeniopygia guttata miR-301-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>tgu-miR-1803-5p MIMAT0026965 Taeniopygia guttata miR-1803-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctct 6
||||||
Sbjct: 6 ggctct 1
>bta-miR-2397-3p MIMAT0011952 Bos taurus miR-2397-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 6 gctctg 1
>osa-miR2094-3p MIMAT0010053 Oryza sativa miR2094-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 6 gctctg 1
>osa-miR1871 MIMAT0007824 Oryza sativa miR1871
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>vvi-miR845b MIMAT0006580 Vitis vinifera miR845b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>vvi-miR845a MIMAT0006579 Vitis vinifera miR845a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>gga-miR-301b-5p MIMAT0007741 Gallus gallus miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>gga-miR-1749-3p MIMAT0007655 Gallus gallus miR-1749-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>gga-miR-1746 MIMAT0007651 Gallus gallus miR-1746
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>gga-miR-1741 MIMAT0007645 Gallus gallus miR-1741
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>gga-miR-1602 MIMAT0007468 Gallus gallus miR-1602
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctct 6
||||||
Sbjct: 3 ggctct 8
>oan-miR-301-5p MIMAT0006909 Ornithorhynchus anatinus miR-301-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>rno-miR-301b-5p MIMAT0017300 Rattus norvegicus miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>pta-miR952a MIMAT0005013 Pinus taeda miR952a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>hsa-miR-301b-5p MIMAT0032026 Homo sapiens miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>ath-miR845b MIMAT0004317 Arabidopsis thaliana miR845b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 3 gctctg 8
>mmu-miR-301b-5p MIMAT0017232 Mus musculus miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>dre-miR-301c-5p MIMAT0031991 Danio rerio miR-301c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>ath-miR415 MIMAT0001323 Arabidopsis thaliana miR415
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctctg 7
||||||
Sbjct: 8 gctctg 3
>hsa-miR-301a-5p MIMAT0022696 Homo sapiens miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>rno-miR-301a-5p MIMAT0017026 Rattus norvegicus miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
>mmu-miR-301a-5p MIMAT0017008 Mus musculus miR-301a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctctg 7
||||||
Sbjct: 1 gctctg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 144
Number of extensions: 122
Number of successful extensions: 96
Number of sequences better than 100.0: 96
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 96
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)