BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-204 MIMAT0035089 Eptesicus fuscus miR-204 14 20
eca-miR-8943 MIMAT0034472 Equus caballus miR-8943 14 20
str-miR-7880r-5p MIMAT0033386 Strongyloides ratti miR-7880r-5p 14 20
ssa-miR-92a-3-5p MIMAT0032709 Salmo salar miR-92a-3-5p 14 20
mmu-miR-7035-5p MIMAT0027974 Mus musculus miR-7035-5p 14 20
prv-miR-LLT11b MIMAT0025316 Pseudorabies virus miR-LLT11b 14 20
prv-miR-LLT11a MIMAT0025315 Pseudorabies virus miR-LLT11a 14 20
cgr-miR-92a-5p MIMAT0024009 Cricetulus griseus miR-92a-5p 14 20
hsa-miR-5787 MIMAT0023252 Homo sapiens miR-5787 14 20
hsa-miR-5589-5p MIMAT0022297 Homo sapiens miR-5589-5p 14 20
hsa-miR-4505 MIMAT0019041 Homo sapiens miR-4505 14 20
mmu-miR-3083-5p MIMAT0014874 Mus musculus miR-3083-5p 14 20
mml-miR-204-3p MIMAT0026843 Macaca mulatta miR-204-3p 14 20
gga-miR-1587 MIMAT0007449 Gallus gallus miR-1587 14 20
oan-miR-1343-3p MIMAT0006875 Ornithorhynchus anatinus miR-1343-3p 14 20
dre-miR-204-3p MIMAT0031924 Danio rerio miR-204-3p 14 20
oha-miR-456 MIMAT0036933 Ophiophagus hannah miR-456 12 80
oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p 12 80
oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p 12 80
chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p 12 80
eca-miR-9181 MIMAT0034762 Equus caballus miR-9181 12 80
eca-miR-1911 MIMAT0034704 Equus caballus miR-1911 12 80
eca-miR-8908e MIMAT0034702 Equus caballus miR-8908e 12 80
eca-miR-8953 MIMAT0034482 Equus caballus miR-8953 12 80
pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a 12 80
str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p 12 80
ssa-miR-456-3p MIMAT0032646 Salmo salar miR-456-3p 12 80
ssa-miR-204-4-3p MIMAT0032491 Salmo salar miR-204-4-3p 12 80
ssa-miR-204-3-3p MIMAT0032490 Salmo salar miR-204-3-3p 12 80
bbe-miR-4874-3p MIMAT0031698 Branchiostoma belcheri miR-4874-3p 12 80
hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977 12 80
mmu-miR-7688-5p MIMAT0029906 Mus musculus miR-7688-5p 12 80
mmu-miR-7669-3p MIMAT0029845 Mus musculus miR-7669-3p 12 80
mmu-miR-7648-3p MIMAT0029799 Mus musculus miR-7648-3p 12 80
ipu-miR-7555 MIMAT0029551 Ictalurus punctatus miR-7555 12 80
ipu-miR-456 MIMAT0029514 Ictalurus punctatus miR-456 12 80
oan-miR-7409-5p MIMAT0028964 Ornithorhynchus anatinus miR-7409-5p 12 80
mdo-miR-7374c-5p MIMAT0028798 Monodelphis domestica miR-7374c-5p 12 80
mdo-miR-7293-3p MIMAT0028571 Monodelphis domestica miR-7293-3p 12 80
ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p 12 80
mmu-miR-6975-5p MIMAT0027852 Mus musculus miR-6975-5p 12 80
mmu-miR-6940-5p MIMAT0027780 Mus musculus miR-6940-5p 12 80
hsa-miR-6842-3p MIMAT0027587 Homo sapiens miR-6842-3p 12 80
hsa-miR-6720-5p MIMAT0027345 Homo sapiens miR-6720-5p 12 80
gga-miR-6641-3p MIMAT0025738 Gallus gallus miR-6641-3p 12 80
gga-miR-6637-3p MIMAT0025733 Gallus gallus miR-6637-3p 12 80
gga-miR-6588-3p MIMAT0025680 Gallus gallus miR-6588-3p 12 80
hsa-miR-6512-3p MIMAT0025481 Homo sapiens miR-6512-3p 12 80
ptc-miR6446 MIMAT0025249 Populus trichocarpa miR6446 12 80
rno-miR-6333 MIMAT0025074 Rattus norvegicus miR-6333 12 80
mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131 12 80
hsa-miR-6131 MIMAT0024615 Homo sapiens miR-6131 12 80
ptr-miR-6131 MIMAT0024605 Pan troglodytes miR-6131 12 80
cgr-miR-664-5p MIMAT0023994 Cricetulus griseus miR-664-5p 12 80
sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204 12 80
osa-miR5496 MIMAT0022129 Oryza sativa miR5496 12 80
aca-miR-456 MIMAT0021966 Anolis carolinensis miR-456 12 80
aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p 12 80
bdi-miR169i MIMAT0020655 Brachypodium distachyon miR169i 12 80
hsa-miR-5001-5p MIMAT0021021 Homo sapiens miR-5001-5p 12 80
bfl-miR-4874-3p MIMAT0020454 Branchiostoma floridae miR-4874-3p 12 80
hsa-miR-4691-3p MIMAT0019782 Homo sapiens miR-4691-3p 12 80
pma-miR-456 MIMAT0019554 Petromyzon marinus miR-456 12 80
hsa-miR-4530 MIMAT0019069 Homo sapiens miR-4530 12 80
hsa-miR-4498 MIMAT0019033 Homo sapiens miR-4498 12 80
hsa-miR-4492 MIMAT0019027 Homo sapiens miR-4492 12 80
hsa-miR-4486 MIMAT0019020 Homo sapiens miR-4486 12 80
hsa-miR-3135b MIMAT0018985 Homo sapiens miR-3135b 12 80
ahy-miR3516 MIMAT0016342 Arachis hypogaea miR3516 12 80
ppy-miR-621 MIMAT0016062 Pongo pygmaeus miR-621 12 80
ppy-miR-612 MIMAT0016053 Pongo pygmaeus miR-612 12 80
esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p 12 80
esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p 12 80
esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p 12 80
esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p 12 80
esi-miR3454g-5p MIMAT0017745 Ectocarpus siliculosus miR3454g-5p 12 80
hsa-miR-3194-5p MIMAT0015078 Homo sapiens miR-3194-5p 12 80
mmu-miR-3078-3p MIMAT0014865 Mus musculus miR-3078-3p 12 80
tgu-miR-456-3p MIMAT0014469 Taeniopygia guttata miR-456-3p 12 80
eca-miR-1905b MIMAT0012957 Equus caballus miR-1905b 12 80
ptr-miR-762 MIMAT0012815 Pan troglodytes miR-762 12 80
mml-miR-762 MIMAT0012791 Macaca mulatta miR-762 12 80
mmu-miR-664-5p MIMAT0017353 Mus musculus miR-664-5p 12 80
dsi-miR-1000-3p MIMAT0012458 Drosophila simulans miR-1000-3p 12 80
dps-miR-1000-3p MIMAT0012266 Drosophila pseudoobscura miR-1000-3p 12 80
dps-miR-311-5p MIMAT0012241 Drosophila pseudoobscura miR-311-5p 12 80
bta-miR-664a MIMAT0012078 Bos taurus miR-664a 12 80
bta-miR-940 MIMAT0009386 Bos taurus miR-940 12 80
ptr-miR-612 MIMAT0008274 Pan troglodytes miR-612 12 80
gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701 12 80
oan-miR-1419e-5p MIMAT0007262 Ornithorhynchus anatinus miR-1419e-5p 12 80
oan-miR-1353 MIMAT0006946 Ornithorhynchus anatinus miR-1353 12 80
oan-miR-1349 MIMAT0006934 Ornithorhynchus anatinus miR-1349 12 80
dme-miR-1000-3p MIMAT0020900 Drosophila melanogaster miR-1000-3p 12 80
sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749 12 80
gga-miR-456-3p MIMAT0003777 Gallus gallus miR-456-3p 12 80
dre-miR-735-5p MIMAT0032012 Danio rerio miR-735-5p 12 80
mmu-miR-762 MIMAT0003892 Mus musculus miR-762 12 80
hsa-miR-762 MIMAT0010313 Homo sapiens miR-762 12 80
rno-miR-664-2-5p MIMAT0017229 Rattus norvegicus miR-664-2-5p 12 80
rno-miR-664-1-5p MIMAT0017228 Rattus norvegicus miR-664-1-5p 12 80
hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p 12 80
hsa-miR-612 MIMAT0003280 Homo sapiens miR-612 12 80
dre-miR-456 MIMAT0001882 Danio rerio miR-456 12 80
dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p 12 80
rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p 12 80
hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p 12 80
mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p 12 80
>efu-miR-204 MIMAT0035089 Eptesicus fuscus miR-204
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 1 ggctggg 7
>eca-miR-8943 MIMAT0034472 Equus caballus miR-8943
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>str-miR-7880r-5p MIMAT0033386 Strongyloides ratti miR-7880r-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>ssa-miR-92a-3-5p MIMAT0032709 Salmo salar miR-92a-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>mmu-miR-7035-5p MIMAT0027974 Mus musculus miR-7035-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 1 ggctggg 7
>prv-miR-LLT11b MIMAT0025316 Pseudorabies virus miR-LLT11b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>prv-miR-LLT11a MIMAT0025315 Pseudorabies virus miR-LLT11a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>cgr-miR-92a-5p MIMAT0024009 Cricetulus griseus miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>hsa-miR-5787 MIMAT0023252 Homo sapiens miR-5787
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>hsa-miR-5589-5p MIMAT0022297 Homo sapiens miR-5589-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 1 ggctggg 7
>hsa-miR-4505 MIMAT0019041 Homo sapiens miR-4505
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>mmu-miR-3083-5p MIMAT0014874 Mus musculus miR-3083-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>mml-miR-204-3p MIMAT0026843 Macaca mulatta miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 1 ggctggg 7
>gga-miR-1587 MIMAT0007449 Gallus gallus miR-1587
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>oan-miR-1343-3p MIMAT0006875 Ornithorhynchus anatinus
miR-1343-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 2 ggctggg 8
>dre-miR-204-3p MIMAT0031924 Danio rerio miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctggg 7
|||||||
Sbjct: 1 ggctggg 7
>oha-miR-456 MIMAT0036933 Ophiophagus hannah miR-456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 6 gctggg 1
>chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>eca-miR-9181 MIMAT0034762 Equus caballus miR-9181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>eca-miR-1911 MIMAT0034704 Equus caballus miR-1911
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 8 ggctgg 3
>eca-miR-8908e MIMAT0034702 Equus caballus miR-8908e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>eca-miR-8953 MIMAT0034482 Equus caballus miR-8953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>ssa-miR-456-3p MIMAT0032646 Salmo salar miR-456-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>ssa-miR-204-4-3p MIMAT0032491 Salmo salar miR-204-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>ssa-miR-204-3-3p MIMAT0032490 Salmo salar miR-204-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>bbe-miR-4874-3p MIMAT0031698 Branchiostoma belcheri miR-4874-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>mmu-miR-7688-5p MIMAT0029906 Mus musculus miR-7688-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>mmu-miR-7669-3p MIMAT0029845 Mus musculus miR-7669-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>mmu-miR-7648-3p MIMAT0029799 Mus musculus miR-7648-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>ipu-miR-7555 MIMAT0029551 Ictalurus punctatus miR-7555
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 8 ggctgg 3
>ipu-miR-456 MIMAT0029514 Ictalurus punctatus miR-456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>oan-miR-7409-5p MIMAT0028964 Ornithorhynchus anatinus
miR-7409-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>mdo-miR-7374c-5p MIMAT0028798 Monodelphis domestica
miR-7374c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 6 ggctgg 1
>mdo-miR-7293-3p MIMAT0028571 Monodelphis domestica miR-7293-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 7 gctggg 2
>mmu-miR-6975-5p MIMAT0027852 Mus musculus miR-6975-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>mmu-miR-6940-5p MIMAT0027780 Mus musculus miR-6940-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-6842-3p MIMAT0027587 Homo sapiens miR-6842-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-6720-5p MIMAT0027345 Homo sapiens miR-6720-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 8 ggctgg 3
>gga-miR-6641-3p MIMAT0025738 Gallus gallus miR-6641-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>gga-miR-6637-3p MIMAT0025733 Gallus gallus miR-6637-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>gga-miR-6588-3p MIMAT0025680 Gallus gallus miR-6588-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>hsa-miR-6512-3p MIMAT0025481 Homo sapiens miR-6512-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 8 ggctgg 3
>ptc-miR6446 MIMAT0025249 Populus trichocarpa miR6446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>rno-miR-6333 MIMAT0025074 Rattus norvegicus miR-6333
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>hsa-miR-6131 MIMAT0024615 Homo sapiens miR-6131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>ptr-miR-6131 MIMAT0024605 Pan troglodytes miR-6131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>cgr-miR-664-5p MIMAT0023994 Cricetulus griseus miR-664-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>osa-miR5496 MIMAT0022129 Oryza sativa miR5496
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 6 ggctgg 1
>aca-miR-456 MIMAT0021966 Anolis carolinensis miR-456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>bdi-miR169i MIMAT0020655 Brachypodium distachyon miR169i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 6 ggctgg 1
>hsa-miR-5001-5p MIMAT0021021 Homo sapiens miR-5001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>bfl-miR-4874-3p MIMAT0020454 Branchiostoma floridae miR-4874-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-4691-3p MIMAT0019782 Homo sapiens miR-4691-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 6 ggctgg 1
>pma-miR-456 MIMAT0019554 Petromyzon marinus miR-456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-4530 MIMAT0019069 Homo sapiens miR-4530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 6 gctggg 1
>hsa-miR-4498 MIMAT0019033 Homo sapiens miR-4498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-4492 MIMAT0019027 Homo sapiens miR-4492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-4486 MIMAT0019020 Homo sapiens miR-4486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>hsa-miR-3135b MIMAT0018985 Homo sapiens miR-3135b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>ahy-miR3516 MIMAT0016342 Arachis hypogaea miR3516
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>ppy-miR-621 MIMAT0016062 Pongo pygmaeus miR-621
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>ppy-miR-612 MIMAT0016053 Pongo pygmaeus miR-612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>esi-miR3454g-5p MIMAT0017745 Ectocarpus siliculosus miR3454g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggg 7
||||||
Sbjct: 8 gctggg 3
>hsa-miR-3194-5p MIMAT0015078 Homo sapiens miR-3194-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 8 ggctgg 3
>mmu-miR-3078-3p MIMAT0014865 Mus musculus miR-3078-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>tgu-miR-456-3p MIMAT0014469 Taeniopygia guttata miR-456-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>eca-miR-1905b MIMAT0012957 Equus caballus miR-1905b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 8 ggctgg 3
>ptr-miR-762 MIMAT0012815 Pan troglodytes miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>mml-miR-762 MIMAT0012791 Macaca mulatta miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>mmu-miR-664-5p MIMAT0017353 Mus musculus miR-664-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>dsi-miR-1000-3p MIMAT0012458 Drosophila simulans miR-1000-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>dps-miR-1000-3p MIMAT0012266 Drosophila pseudoobscura
miR-1000-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>dps-miR-311-5p MIMAT0012241 Drosophila pseudoobscura miR-311-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>bta-miR-664a MIMAT0012078 Bos taurus miR-664a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>bta-miR-940 MIMAT0009386 Bos taurus miR-940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>ptr-miR-612 MIMAT0008274 Pan troglodytes miR-612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>oan-miR-1419e-5p MIMAT0007262 Ornithorhynchus anatinus
miR-1419e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>oan-miR-1353 MIMAT0006946 Ornithorhynchus anatinus miR-1353
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgg 6
||||||
Sbjct: 6 ggctgg 1
>oan-miR-1349 MIMAT0006934 Ornithorhynchus anatinus miR-1349
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>dme-miR-1000-3p MIMAT0020900 Drosophila melanogaster
miR-1000-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 3 gctggg 8
>sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>gga-miR-456-3p MIMAT0003777 Gallus gallus miR-456-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>dre-miR-735-5p MIMAT0032012 Danio rerio miR-735-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 1 ggctgg 6
>mmu-miR-762 MIMAT0003892 Mus musculus miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-762 MIMAT0010313 Homo sapiens miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>rno-miR-664-2-5p MIMAT0017229 Rattus norvegicus miR-664-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>rno-miR-664-1-5p MIMAT0017228 Rattus norvegicus miR-664-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>hsa-miR-612 MIMAT0003280 Homo sapiens miR-612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>dre-miR-456 MIMAT0001882 Danio rerio miR-456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgg 6
||||||
Sbjct: 3 ggctgg 8
>dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
>mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggg 7
||||||
Sbjct: 1 gctggg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 161
Number of extensions: 145
Number of successful extensions: 108
Number of sequences better than 100.0: 108
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 108
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)