BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-2c-3p MIMAT0035277 Gyrodactylus salaris miR-2c-3p 14 20
pxy-miR-2b MIMAT0033803 Plutella xylostella miR-2b 14 20
sma-miR-2f-3p MIMAT0033691 Schistosoma mansoni miR-2f-3p 14 20
hsa-miR-7974 MIMAT0031177 Homo sapiens miR-7974 14 20
mdo-miR-7334-5p MIMAT0028676 Monodelphis domestica miR-7334-5p 14 20
mdo-miR-7289-3p MIMAT0028561 Monodelphis domestica miR-7289-3p 14 20
blv-miR-B1-5p MIMAT0027346 Bovine leukemia miR-B1-5p 14 20
gga-miR-3594-5p MIMAT0025641 Gallus gallus miR-3594-5p 14 20
gga-miR-6551-3p MIMAT0025610 Gallus gallus miR-6551-3p 14 20
sma-miR-2a-3p MIMAT0025030 Schistosoma mansoni miR-2a-3p 14 20
mse-miR-2b MIMAT0024480 Manduca sexta miR-2b 14 20
mse-miR-2a MIMAT0024479 Manduca sexta miR-2a 14 20
mse-miR-31 MIMAT0024447 Manduca sexta miR-31 14 20
tur-miR-5733-3p MIMAT0023065 Tetranychus urticae miR-5733-3p 14 20
emu-miR-2c-3p MIMAT0020257 Echinococcus multilocularis miR-2c-3p 14 20
egr-miR-2c-3p MIMAT0020232 Echinococcus granulosus miR-2c-3p 14 20
sja-miR-2a-3p MIMAT0016246 Schistosoma japonicum miR-2a-3p 14 20
cte-miR-2b MIMAT0009504 Capitella teleta miR-2b 14 20
bmo-miR-31-3p MIMAT0015242 Bombyx mori miR-31-3p 14 20
sme-miR-2d-3p MIMAT0003968 Schmidtea mediterranea miR-2d-3p 14 20
sme-miR-2c-3p MIMAT0003967 Schmidtea mediterranea miR-2c-3p 14 20
sme-miR-2b-3p MIMAT0003966 Schmidtea mediterranea miR-2b-3p 14 20
efu-miR-9228 MIMAT0034830 Eptesicus fuscus miR-9228 12 80
eca-miR-9178 MIMAT0034758 Equus caballus miR-9178 12 80
pxy-miR-8546 MIMAT0033815 Plutella xylostella miR-8546 12 80
ssa-miR-730a-3p MIMAT0032680 Salmo salar miR-730a-3p 12 80
ssa-miR-460-3p MIMAT0032652 Salmo salar miR-460-3p 12 80
ssa-miR-2188-3p MIMAT0032523 Salmo salar miR-2188-3p 12 80
ssa-miR-15e-3p MIMAT0032404 Salmo salar miR-15e-3p 12 80
bbe-miR-31-3p MIMAT0031667 Branchiostoma belcheri miR-31-3p 12 80
stu-miR408a-3p MIMAT0031338 Solanum tuberosum miR408a-3p 12 80
mmu-miR-7677-3p MIMAT0029869 Mus musculus miR-7677-3p 12 80
ipu-miR-460 MIMAT0029518 Ictalurus punctatus miR-460 12 80
aja-miR-3120 MIMAT0031146 Artibeus jamaicensis miR-3120 12 80
oan-miR-7403-3p MIMAT0028949 Ornithorhynchus anatinus miR-7403-3p 12 80
mml-miR-7173-5p MIMAT0028284 Macaca mulatta miR-7173-5p 12 80
ccr-miR-460-3p MIMAT0026307 Cyprinus carpio miR-460-3p 12 80
mmu-miR-6985-3p MIMAT0027873 Mus musculus miR-6985-3p 12 80
mmu-miR-6981-3p MIMAT0027865 Mus musculus miR-6981-3p 12 80
mmu-miR-6971-3p MIMAT0027845 Mus musculus miR-6971-3p 12 80
gga-miR-6609-3p MIMAT0025704 Gallus gallus miR-6609-3p 12 80
gga-miR-6578-5p MIMAT0025663 Gallus gallus miR-6578-5p 12 80
hme-miR-928 MIMAT0024991 Heliconius melpomene miR-928 12 80
hbr-miR396a MIMAT0024791 Hevea brasiliensis miR396a 12 80
bta-miR-3120 MIMAT0024572 Bos taurus miR-3120 12 80
cgr-miR-674 MIMAT0023999 Cricetulus griseus miR-674 12 80
ame-miR-6047a MIMAT0023671 Apis mellifera miR-6047a 12 80
tur-miR-5728-1-5p MIMAT0023032 Tetranychus urticae miR-5728-1-5p 12 80
tur-miR-5732-5p MIMAT0023062 Tetranychus urticae miR-5732-5p 12 80
tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p 12 80
bra-miR1140 MIMAT0023021 Brassica rapa miR1140 12 80
hsa-miR-5685 MIMAT0022475 Homo sapiens miR-5685 12 80
aca-miR-460a-3p MIMAT0021971 Anolis carolinensis miR-460a-3p 12 80
aca-miR-383-3p MIMAT0021953 Anolis carolinensis miR-383-3p 12 80
gma-miR396h MIMAT0021668 Glycine max miR396h 12 80
rmi-miR-5335 MIMAT0021408 Rhipicephalus microplus miR-5335 12 80
gma-miR5033 MIMAT0021053 Glycine max miR5033 12 80
hsa-miR-4741 MIMAT0019871 Homo sapiens miR-4741 12 80
hsa-miR-4675 MIMAT0019757 Homo sapiens miR-4675 12 80
tca-miR-3886-5p MIMAT0018870 Tribolium castaneum miR-3886-5p 12 80
cin-miR-4049-3p MIMAT0016588 Ciona intestinalis miR-4049-3p 12 80
rno-miR-3120 MIMAT0017900 Rattus norvegicus miR-3120 12 80
nvi-miR-928 MIMAT0015705 Nasonia vitripennis miR-928 12 80
aly-miR834-5p MIMAT0017617 Arabidopsis lyrata miR834-5p 12 80
hsa-miR-3120-3p MIMAT0014982 Homo sapiens miR-3120-3p 12 80
tgu-miR-460a-3p MIMAT0014658 Taeniopygia guttata miR-460a-3p 12 80
tgu-miR-2993 MIMAT0014550 Taeniopygia guttata miR-2993 12 80
bta-miR-2902 MIMAT0013860 Bos taurus miR-2902 12 80
eca-miR-301b-5p MIMAT0013000 Equus caballus miR-301b-5p 12 80
mdo-miR-460-3p MIMAT0026945 Monodelphis domestica miR-460-3p 12 80
bmo-miR-2812 MIMAT0013720 Bombyx mori miR-2812 12 80
mtr-miR2623 MIMAT0013343 Medicago truncatula miR2623 12 80
bta-miR-2294 MIMAT0011802 Bos taurus miR-2294 12 80
dvi-miR-313-5p MIMAT0032050 Drosophila virilis miR-313-5p 12 80
gga-miR-1696 MIMAT0007588 Gallus gallus miR-1696 12 80
gga-miR-1658-3p MIMAT0007539 Gallus gallus miR-1658-3p 12 80
gga-miR-1558 MIMAT0007415 Gallus gallus miR-1558 12 80
gga-miR-460b-3p MIMAT0007327 Gallus gallus miR-460b-3p 12 80
oan-miR-460-3p MIMAT0006916 Ornithorhynchus anatinus miR-460-3p 12 80
bna-miR1140 MIMAT0005637 Brassica napus miR1140 12 80
rno-miR-674-3p MIMAT0005330 Rattus norvegicus miR-674-3p 12 80
rno-miR-673-5p MIMAT0005328 Rattus norvegicus miR-673-5p 12 80
ppt-miR1042-5p MIMAT0005152 Physcomitrella patens miR1042-5p 12 80
dme-miR-1008-3p MIMAT0005021 Drosophila melanogaster miR-1008-3p 12 80
ame-miR-928 MIMAT0004439 Apis mellifera miR-928 12 80
ppt-miR898a-5p MIMAT0004382 Physcomitrella patens miR898a-5p 12 80
ppt-miR898b MIMAT0004381 Physcomitrella patens miR898b 12 80
gga-miR-460a-3p MIMAT0026646 Gallus gallus miR-460a-3p 12 80
mmu-miR-674-3p MIMAT0003741 Mus musculus miR-674-3p 12 80
mmu-miR-673-5p MIMAT0003739 Mus musculus miR-673-5p 12 80
hcmv-miR-US4-3p MIMAT0026628 Human cytomegalovirus miR-US4-3p 12 80
tni-miR-460 MIMAT0002998 Tetraodon nigroviridis miR-460 12 80
fru-miR-460 MIMAT0002997 Fugu rubripes miR-460 12 80
dre-miR-460-3p MIMAT0001888 Danio rerio miR-460-3p 12 80
>gsa-miR-2c-3p MIMAT0035277 Gyrodactylus salaris miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>pxy-miR-2b MIMAT0033803 Plutella xylostella miR-2b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>sma-miR-2f-3p MIMAT0033691 Schistosoma mansoni miR-2f-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>hsa-miR-7974 MIMAT0031177 Homo sapiens miR-7974
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 2 ggctgtg 8
>mdo-miR-7334-5p MIMAT0028676 Monodelphis domestica miR-7334-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 2 ggctgtg 8
>mdo-miR-7289-3p MIMAT0028561 Monodelphis domestica miR-7289-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 7 ggctgtg 1
>blv-miR-B1-5p MIMAT0027346 Bovine leukemia miR-B1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 2 ggctgtg 8
>gga-miR-3594-5p MIMAT0025641 Gallus gallus miR-3594-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>gga-miR-6551-3p MIMAT0025610 Gallus gallus miR-6551-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 2 ggctgtg 8
>sma-miR-2a-3p MIMAT0025030 Schistosoma mansoni miR-2a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>mse-miR-2b MIMAT0024480 Manduca sexta miR-2b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>mse-miR-2a MIMAT0024479 Manduca sexta miR-2a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>mse-miR-31 MIMAT0024447 Manduca sexta miR-31
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 1 ggctgtg 7
>tur-miR-5733-3p MIMAT0023065 Tetranychus urticae miR-5733-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 2 ggctgtg 8
>emu-miR-2c-3p MIMAT0020257 Echinococcus multilocularis
miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>egr-miR-2c-3p MIMAT0020232 Echinococcus granulosus miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>sja-miR-2a-3p MIMAT0016246 Schistosoma japonicum miR-2a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>cte-miR-2b MIMAT0009504 Capitella teleta miR-2b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>bmo-miR-31-3p MIMAT0015242 Bombyx mori miR-31-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggctgtg 7
|||||||
Sbjct: 1 ggctgtg 7
>sme-miR-2d-3p MIMAT0003968 Schmidtea mediterranea miR-2d-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>sme-miR-2c-3p MIMAT0003967 Schmidtea mediterranea miR-2c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>sme-miR-2b-3p MIMAT0003966 Schmidtea mediterranea miR-2b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggctgtg 7
|||||||
Sbjct: 8 ggctgtg 2
>efu-miR-9228 MIMAT0034830 Eptesicus fuscus miR-9228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>eca-miR-9178 MIMAT0034758 Equus caballus miR-9178
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>pxy-miR-8546 MIMAT0033815 Plutella xylostella miR-8546
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 1 ggctgt 6
>ssa-miR-730a-3p MIMAT0032680 Salmo salar miR-730a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>ssa-miR-460-3p MIMAT0032652 Salmo salar miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>ssa-miR-2188-3p MIMAT0032523 Salmo salar miR-2188-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 1 gctgtg 6
>ssa-miR-15e-3p MIMAT0032404 Salmo salar miR-15e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>bbe-miR-31-3p MIMAT0031667 Branchiostoma belcheri miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 1 gctgtg 6
>stu-miR408a-3p MIMAT0031338 Solanum tuberosum miR408a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>mmu-miR-7677-3p MIMAT0029869 Mus musculus miR-7677-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>ipu-miR-460 MIMAT0029518 Ictalurus punctatus miR-460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>aja-miR-3120 MIMAT0031146 Artibeus jamaicensis miR-3120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>oan-miR-7403-3p MIMAT0028949 Ornithorhynchus anatinus
miR-7403-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 1 ggctgt 6
>mml-miR-7173-5p MIMAT0028284 Macaca mulatta miR-7173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>ccr-miR-460-3p MIMAT0026307 Cyprinus carpio miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>mmu-miR-6985-3p MIMAT0027873 Mus musculus miR-6985-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>mmu-miR-6981-3p MIMAT0027865 Mus musculus miR-6981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 8 ggctgt 3
>mmu-miR-6971-3p MIMAT0027845 Mus musculus miR-6971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 6 ggctgt 1
>gga-miR-6609-3p MIMAT0025704 Gallus gallus miR-6609-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 6 ggctgt 1
>gga-miR-6578-5p MIMAT0025663 Gallus gallus miR-6578-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>hme-miR-928 MIMAT0024991 Heliconius melpomene miR-928
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>hbr-miR396a MIMAT0024791 Hevea brasiliensis miR396a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>bta-miR-3120 MIMAT0024572 Bos taurus miR-3120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>cgr-miR-674 MIMAT0023999 Cricetulus griseus miR-674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>ame-miR-6047a MIMAT0023671 Apis mellifera miR-6047a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>tur-miR-5728-1-5p MIMAT0023032 Tetranychus urticae
miR-5728-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 6 ggctgt 1
>tur-miR-5732-5p MIMAT0023062 Tetranychus urticae miR-5732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 8 ggctgt 3
>tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>bra-miR1140 MIMAT0023021 Brassica rapa miR1140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 6 ggctgt 1
>hsa-miR-5685 MIMAT0022475 Homo sapiens miR-5685
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 6 ggctgt 1
>aca-miR-460a-3p MIMAT0021971 Anolis carolinensis miR-460a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>aca-miR-383-3p MIMAT0021953 Anolis carolinensis miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>gma-miR396h MIMAT0021668 Glycine max miR396h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>rmi-miR-5335 MIMAT0021408 Rhipicephalus microplus miR-5335
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>gma-miR5033 MIMAT0021053 Glycine max miR5033
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 1 ggctgt 6
>hsa-miR-4741 MIMAT0019871 Homo sapiens miR-4741
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>hsa-miR-4675 MIMAT0019757 Homo sapiens miR-4675
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>tca-miR-3886-5p MIMAT0018870 Tribolium castaneum miR-3886-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 7 gctgtg 2
>cin-miR-4049-3p MIMAT0016588 Ciona intestinalis miR-4049-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>rno-miR-3120 MIMAT0017900 Rattus norvegicus miR-3120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>nvi-miR-928 MIMAT0015705 Nasonia vitripennis miR-928
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>aly-miR834-5p MIMAT0017617 Arabidopsis lyrata miR834-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>hsa-miR-3120-3p MIMAT0014982 Homo sapiens miR-3120-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>tgu-miR-460a-3p MIMAT0014658 Taeniopygia guttata miR-460a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>tgu-miR-2993 MIMAT0014550 Taeniopygia guttata miR-2993
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>bta-miR-2902 MIMAT0013860 Bos taurus miR-2902
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>eca-miR-301b-5p MIMAT0013000 Equus caballus miR-301b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 1 gctgtg 6
>mdo-miR-460-3p MIMAT0026945 Monodelphis domestica miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>bmo-miR-2812 MIMAT0013720 Bombyx mori miR-2812
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>mtr-miR2623 MIMAT0013343 Medicago truncatula miR2623
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>bta-miR-2294 MIMAT0011802 Bos taurus miR-2294
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>dvi-miR-313-5p MIMAT0032050 Drosophila virilis miR-313-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>gga-miR-1696 MIMAT0007588 Gallus gallus miR-1696
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>gga-miR-1658-3p MIMAT0007539 Gallus gallus miR-1658-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>gga-miR-1558 MIMAT0007415 Gallus gallus miR-1558
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>gga-miR-460b-3p MIMAT0007327 Gallus gallus miR-460b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>oan-miR-460-3p MIMAT0006916 Ornithorhynchus anatinus miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>bna-miR1140 MIMAT0005637 Brassica napus miR1140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 6 ggctgt 1
>rno-miR-674-3p MIMAT0005330 Rattus norvegicus miR-674-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>rno-miR-673-5p MIMAT0005328 Rattus norvegicus miR-673-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>ppt-miR1042-5p MIMAT0005152 Physcomitrella patens miR1042-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 1 gctgtg 6
>dme-miR-1008-3p MIMAT0005021 Drosophila melanogaster
miR-1008-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 7 gctgtg 2
>ame-miR-928 MIMAT0004439 Apis mellifera miR-928
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggctgt 6
||||||
Sbjct: 3 ggctgt 8
>ppt-miR898a-5p MIMAT0004382 Physcomitrella patens miR898a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>ppt-miR898b MIMAT0004381 Physcomitrella patens miR898b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctgtg 7
||||||
Sbjct: 3 gctgtg 8
>gga-miR-460a-3p MIMAT0026646 Gallus gallus miR-460a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>mmu-miR-674-3p MIMAT0003741 Mus musculus miR-674-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>mmu-miR-673-5p MIMAT0003739 Mus musculus miR-673-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 8 gctgtg 3
>hcmv-miR-US4-3p MIMAT0026628 Human cytomegalovirus miR-US4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggctgt 6
||||||
Sbjct: 8 ggctgt 3
>tni-miR-460 MIMAT0002998 Tetraodon nigroviridis miR-460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>fru-miR-460 MIMAT0002997 Fugu rubripes miR-460
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
>dre-miR-460-3p MIMAT0001888 Danio rerio miR-460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctgtg 7
||||||
Sbjct: 6 gctgtg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 119
Number of successful extensions: 94
Number of sequences better than 100.0: 94
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 94
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
