BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-13-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808 14 20
mes-miR482 MIMAT0029297 Manihot esculenta miR482 14 20
mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p 14 20
pde-miR482b MIMAT0025334 Pinus densata miR482b 14 20
hsa-miR-6077 MIMAT0023702 Homo sapiens miR-6077 14 20
vun-miR482 MIMAT0022766 Vigna unguiculata miR482 14 20
gma-miR482d-3p MIMAT0021672 Glycine max miR482d-3p 14 20
csi-miR482a-3p MIMAT0018480 Citrus sinensis miR482a-3p 14 20
gma-miR482b-3p MIMAT0020952 Glycine max miR482b-3p 14 20
mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus miR-M1-13-5p 14 20
pab-miR482b MIMAT0018157 Picea abies miR482b 14 20
pab-miR482a MIMAT0018156 Picea abies miR482a 14 20
gso-miR482b MIMAT0016354 Glycine soja miR482b 14 20
gso-miR482a MIMAT0016353 Glycine soja miR482a 14 20
pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p 14 20
gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p 14 20
pta-miR482c MIMAT0006014 Pinus taeda miR482c 14 20
dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p 14 20
pta-miR482b MIMAT0005003 Pinus taeda miR482b 14 20
pta-miR482a MIMAT0005002 Pinus taeda miR482a 14 20
hsa-miR-9500 MIMAT0035542 Homo sapiens miR-9500 12 80
efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a 12 80
efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c 12 80
eca-miR-9082 MIMAT0034627 Equus caballus miR-9082 12 80
eca-miR-9020 MIMAT0034561 Equus caballus miR-9020 12 80
sma-miR-8420-3p MIMAT0033545 Schistosoma mansoni miR-8420-3p 12 80
mmu-miR-7665-5p MIMAT0029836 Mus musculus miR-7665-5p 12 80
lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b 12 80
lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a 12 80
lja-miR408 MIMAT0029327 Lotus japonicus miR408 12 80
gga-miR-7455-3p MIMAT0029065 Gallus gallus miR-7455-3p 12 80
mdo-miR-7351-3p MIMAT0028715 Monodelphis domestica miR-7351-3p 12 80
mdo-miR-7261-5p MIMAT0028488 Monodelphis domestica miR-7261-5p 12 80
mmu-miR-7118-5p MIMAT0028133 Mus musculus miR-7118-5p 12 80
mmu-miR-6769b-3p MIMAT0028041 Mus musculus miR-6769b-3p 12 80
mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p 12 80
mmu-miR-6976-5p MIMAT0027854 Mus musculus miR-6976-5p 12 80
mmu-miR-3547-5p MIMAT0027832 Mus musculus miR-3547-5p 12 80
hsa-miR-6875-3p MIMAT0027651 Homo sapiens miR-6875-3p 12 80
hsa-miR-6780b-5p MIMAT0027572 Homo sapiens miR-6780b-5p 12 80
hsa-miR-6734-3p MIMAT0027370 Homo sapiens miR-6734-3p 12 80
gga-miR-6695-5p MIMAT0025801 Gallus gallus miR-6695-5p 12 80
mmu-miR-6405 MIMAT0025157 Mus musculus miR-6405 12 80
mmu-miR-6404 MIMAT0025156 Mus musculus miR-6404 12 80
mmu-miR-6368 MIMAT0025112 Mus musculus miR-6368 12 80
sma-miR-31-3p MIMAT0032136 Schistosoma mansoni miR-31-3p 12 80
ppe-miR482b-3p MIMAT0027273 Prunus persica miR482b-3p 12 80
cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903 12 80
nta-miR6021 MIMAT0023588 Nicotiana tabacum miR6021 12 80
rgl-miR164 MIMAT0023004 Rehmannia glutinosa miR164 12 80
sbi-miR5564a MIMAT0022241 Sorghum bicolor miR5564a 12 80
hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p 12 80
gma-miR4361 MIMAT0018256 Glycine max miR4361 12 80
tca-miR-3049-5p MIMAT0018776 Tribolium castaneum miR-3049-5p 12 80
ame-miR-3049-5p MIMAT0022968 Apis mellifera miR-3049-5p 12 80
hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p 12 80
hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 12 80
cin-miR-4095-5p MIMAT0016676 Ciona intestinalis miR-4095-5p 12 80
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236 12 80
api-miR-3049 MIMAT0014789 Acyrthosiphon pisum miR-3049 12 80
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 12 80
bta-miR-2883 MIMAT0013841 Bos taurus miR-2883 12 80
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b 12 80
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a 12 80
bta-miR-2406 MIMAT0011964 Bos taurus miR-2406 12 80
bta-miR-2373-5p MIMAT0011918 Bos taurus miR-2373-5p 12 80
hsv1-miR-H6-3p MIMAT0008404 Herpes Simplex miR-H6-3p 12 80
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236 12 80
gga-miR-1778 MIMAT0007689 Gallus gallus miR-1778 12 80
gma-miR1526 MIMAT0007388 Glycine max miR1526 12 80
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p 12 80
mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p 12 80
kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated miR-K12... 12 80
hsa-miR-141-5p MIMAT0004598 Homo sapiens miR-141-5p 12 80
mmu-miR-141-5p MIMAT0004533 Mus musculus miR-141-5p 12 80
>cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggaaga 7
|||||||
Sbjct: 2 gggaaga 8
>mes-miR482 MIMAT0029297 Manihot esculenta miR482
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggaaga 7
|||||||
Sbjct: 2 gggaaga 8
>pde-miR482b MIMAT0025334 Pinus densata miR482b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>hsa-miR-6077 MIMAT0023702 Homo sapiens miR-6077
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggaaga 7
|||||||
Sbjct: 1 gggaaga 7
>vun-miR482 MIMAT0022766 Vigna unguiculata miR482
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>gma-miR482d-3p MIMAT0021672 Glycine max miR482d-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>csi-miR482a-3p MIMAT0018480 Citrus sinensis miR482a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>gma-miR482b-3p MIMAT0020952 Glycine max miR482b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus
miR-M1-13-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggaaga 7
|||||||
Sbjct: 2 gggaaga 8
>pab-miR482b MIMAT0018157 Picea abies miR482b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>pab-miR482a MIMAT0018156 Picea abies miR482a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>gso-miR482b MIMAT0016354 Glycine soja miR482b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>gso-miR482a MIMAT0016353 Glycine soja miR482a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>pta-miR482c MIMAT0006014 Pinus taeda miR482c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 8 gggaaga 2
>pta-miR482b MIMAT0005003 Pinus taeda miR482b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>pta-miR482a MIMAT0005002 Pinus taeda miR482a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggaaga 7
|||||||
Sbjct: 7 gggaaga 1
>hsa-miR-9500 MIMAT0035542 Homo sapiens miR-9500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 7 ggaaga 2
>eca-miR-9082 MIMAT0034627 Equus caballus miR-9082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 7 ggaaga 2
>eca-miR-9020 MIMAT0034561 Equus caballus miR-9020
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>sma-miR-8420-3p MIMAT0033545 Schistosoma mansoni miR-8420-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>mmu-miR-7665-5p MIMAT0029836 Mus musculus miR-7665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>lja-miR408 MIMAT0029327 Lotus japonicus miR408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>gga-miR-7455-3p MIMAT0029065 Gallus gallus miR-7455-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 6 gggaag 1
>mdo-miR-7351-3p MIMAT0028715 Monodelphis domestica miR-7351-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 1 ggaaga 6
>mdo-miR-7261-5p MIMAT0028488 Monodelphis domestica miR-7261-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>mmu-miR-7118-5p MIMAT0028133 Mus musculus miR-7118-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>mmu-miR-6769b-3p MIMAT0028041 Mus musculus miR-6769b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>mmu-miR-6976-5p MIMAT0027854 Mus musculus miR-6976-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>mmu-miR-3547-5p MIMAT0027832 Mus musculus miR-3547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>hsa-miR-6875-3p MIMAT0027651 Homo sapiens miR-6875-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>hsa-miR-6780b-5p MIMAT0027572 Homo sapiens miR-6780b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>hsa-miR-6734-3p MIMAT0027370 Homo sapiens miR-6734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 8 gggaag 3
>gga-miR-6695-5p MIMAT0025801 Gallus gallus miR-6695-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>mmu-miR-6405 MIMAT0025157 Mus musculus miR-6405
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>mmu-miR-6404 MIMAT0025156 Mus musculus miR-6404
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>mmu-miR-6368 MIMAT0025112 Mus musculus miR-6368
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>sma-miR-31-3p MIMAT0032136 Schistosoma mansoni miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 8 gggaag 3
>ppe-miR482b-3p MIMAT0027273 Prunus persica miR482b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 6 gggaag 1
>cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>nta-miR6021 MIMAT0023588 Nicotiana tabacum miR6021
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>rgl-miR164 MIMAT0023004 Rehmannia glutinosa miR164
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>sbi-miR5564a MIMAT0022241 Sorghum bicolor miR5564a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>gma-miR4361 MIMAT0018256 Glycine max miR4361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>tca-miR-3049-5p MIMAT0018776 Tribolium castaneum miR-3049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>ame-miR-3049-5p MIMAT0022968 Apis mellifera miR-3049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 6 gggaag 1
>hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>cin-miR-4095-5p MIMAT0016676 Ciona intestinalis miR-4095-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 6 gggaag 1
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>api-miR-3049 MIMAT0014789 Acyrthosiphon pisum miR-3049
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>bta-miR-2883 MIMAT0013841 Bos taurus miR-2883
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 6 gggaag 1
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>bta-miR-2406 MIMAT0011964 Bos taurus miR-2406
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>bta-miR-2373-5p MIMAT0011918 Bos taurus miR-2373-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 6 gggaag 1
>hsv1-miR-H6-3p MIMAT0008404 Herpes Simplex miR-H6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggaag 6
||||||
Sbjct: 8 gggaag 3
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>gga-miR-1778 MIMAT0007689 Gallus gallus miR-1778
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggaag 6
||||||
Sbjct: 3 gggaag 8
>gma-miR1526 MIMAT0007388 Glycine max miR1526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaga 7
||||||
Sbjct: 3 ggaaga 8
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 6 ggaaga 1
>kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated
miR-K12-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>hsa-miR-141-5p MIMAT0004598 Homo sapiens miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-141-5p MIMAT0004533 Mus musculus miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaga 7
||||||
Sbjct: 8 ggaaga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 210
Number of extensions: 190
Number of successful extensions: 75
Number of sequences better than 100.0: 75
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 75
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
