BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d18-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p                  16   6.9  
ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p               14      27
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p                    14      27
cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a                  14      27
prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p         14      27
mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364                        14      27
hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935                14      27
bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b             14      27
ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638                        14      27
mml-miR-638 MIMAT0006480 Macaca mulatta miR-638                        14      27
hsa-miR-638 MIMAT0003308 Homo sapiens miR-638                          14      27
>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gggatcgg 8
         ||||||||
Sbjct: 1 gggatcgg 8
>ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ggatcgg 8
         |||||||
Sbjct: 8 ggatcgg 2
>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 2 gggatcg 8
>cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ggatcgg 8
         |||||||
Sbjct: 2 ggatcgg 8
>prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 7 gggatcg 1
>mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 8 gggatcg 2
>hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 2 gggatcg 8
>bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ggatcgg 8
         |||||||
Sbjct: 8 ggatcgg 2
>ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 2 gggatcg 8
>mml-miR-638 MIMAT0006480 Macaca mulatta miR-638
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 2 gggatcg 8
>hsa-miR-638 MIMAT0003308 Homo sapiens miR-638
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 2 gggatcg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 70
Number of extensions: 58
Number of successful extensions: 43
Number of sequences better than 100.0: 11
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)