VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d18-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p                  16   6.9  
ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p               14      27
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p                    14      27
cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a                  14      27
prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p         14      27
mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364                        14      27
hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935                14      27
bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b             14      27
ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638                        14      27
mml-miR-638 MIMAT0006480 Macaca mulatta miR-638                        14      27
hsa-miR-638 MIMAT0003308 Homo sapiens miR-638                          14      27

>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gggatcgg 8
         ||||||||
Sbjct: 1 gggatcgg 8



>ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ggatcgg 8
         |||||||
Sbjct: 8 ggatcgg 2



>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 2 gggatcg 8



>cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ggatcgg 8
         |||||||
Sbjct: 2 ggatcgg 8



>prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggatcg 7
         |||||||
Sbjct: 7 gggatcg 1



>mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus