BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-7-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-9876 MIMAT0037280 Apis mellifera miR-9876 14 27
gma-miR9763 MIMAT0036400 Glycine max miR9763 14 27
mdo-miR-7309-5p MIMAT0028616 Monodelphis domestica miR-7309-5p 14 27
mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p 14 27
dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p 14 27
mmu-miR-7020-5p MIMAT0027944 Mus musculus miR-7020-5p 14 27
mmu-miR-7007-3p MIMAT0027919 Mus musculus miR-7007-3p 14 27
ppy-miR-1193 MIMAT0024369 Pongo pygmaeus miR-1193 14 27
ggo-miR-1193 MIMAT0024256 Gorilla gorilla miR-1193 14 27
oar-miR-1193-5p MIMAT0019269 Ovis aries miR-1193-5p 14 27
hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193 14 27
ppt-miR1077-3p MIMAT0005209 Physcomitrella patens miR1077-3p 14 27
hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p 14 27
>ame-miR-9876 MIMAT0037280 Apis mellifera miR-9876
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 2 gggatgg 8
>gma-miR9763 MIMAT0036400 Glycine max miR9763
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggatggg 8
|||||||
Sbjct: 8 ggatggg 2
>mdo-miR-7309-5p MIMAT0028616 Monodelphis domestica miR-7309-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 2 gggatgg 8
>mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggatgg 7
|||||||
Sbjct: 8 gggatgg 2
>dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggatgg 7
|||||||
Sbjct: 7 gggatgg 1
>mmu-miR-7020-5p MIMAT0027944 Mus musculus miR-7020-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 2 gggatgg 8
>mmu-miR-7007-3p MIMAT0027919 Mus musculus miR-7007-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggatggg 8
|||||||
Sbjct: 7 ggatggg 1
>ppy-miR-1193 MIMAT0024369 Pongo pygmaeus miR-1193
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 1 gggatgg 7
>ggo-miR-1193 MIMAT0024256 Gorilla gorilla miR-1193
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 1 gggatgg 7
>oar-miR-1193-5p MIMAT0019269 Ovis aries miR-1193-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 1 gggatgg 7
>hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 1 gggatgg 7
>ppt-miR1077-3p MIMAT0005209 Physcomitrella patens miR1077-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 2 gggatgg 8
>hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggatgg 7
|||||||
Sbjct: 2 gggatgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 133
Number of extensions: 120
Number of successful extensions: 95
Number of sequences better than 100.0: 13
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
