BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rhcmv-miR-rh96-3
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8255-3p MIMAT0032979 Pristionchus pacificus miR-8255-3p        14      20
bdi-miR7724b-3p MIMAT0030177 Brachypodium distachyon miR7724b-3p       14      20
bdi-miR7724a-3p MIMAT0030175 Brachypodium distachyon miR7724a-3p       14      20
mdo-miR-7256-3p MIMAT0028479 Monodelphis domestica miR-7256-3p         14      20
bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9                     14      20
bta-miR-2284r MIMAT0012010 Bos taurus miR-2284r                        14      20
efu-miR-9346 MIMAT0035116 Eptesicus fuscus miR-9346                    12      80
cfa-miR-8829 MIMAT0034322 Canis familiaris miR-8829                    12      80
ppc-miR-8358-3p MIMAT0033279 Pristionchus pacificus miR-8358-3p        12      80
ppc-miR-8293-5p MIMAT0033099 Pristionchus pacificus miR-8293-5p        12      80
stu-miR171c-5p MIMAT0031258 Solanum tuberosum miR171c-5p               12      80
stu-miR171a-5p MIMAT0031256 Solanum tuberosum miR171a-5p               12      80
bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon miR7723a-3p       12      80
mdo-miR-7250-3p MIMAT0028467 Monodelphis domestica miR-7250-3p         12      80
mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p                12      80
hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p                  12      80
mmu-miR-7077-5p MIMAT0028060 Mus musculus miR-7077-5p                  12      80
mmu-miR-7034-3p MIMAT0027973 Mus musculus miR-7034-3p                  12      80
mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p                  12      80
hsa-miR-6895-5p MIMAT0027690 Homo sapiens miR-6895-5p                  12      80
hsa-miR-6851-3p MIMAT0027603 Homo sapiens miR-6851-3p                  12      80
hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p                  12      80
hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p                  12      80
hvu-miR6200 MIMAT0024827 Hordeum vulgare miR6200                       12      80
pgi-miR6135i MIMAT0027250 Panax ginseng miR6135i                       12      80
aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p           12      80
gma-miR171j-5p MIMAT0021623 Glycine max miR171j-5p                     12      80
dme-miR-4981-3p MIMAT0020214 Drosophila melanogaster miR-4981-3p       12      80
hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p                  12      80
hsa-miR-4701-5p MIMAT0019798 Homo sapiens miR-4701-5p                  12      80
pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607                  12      80
tca-miR-3830-3p MIMAT0018691 Tribolium castaneum miR-3830-3p           12      80
ppy-miR-1291 MIMAT0016213 Pongo pygmaeus miR-1291                      12      80
ppy-miR-663b MIMAT0016093 Pongo pygmaeus miR-663b                      12      80
ppy-miR-588 MIMAT0016030 Pongo pygmaeus miR-588                        12      80
ppy-miR-575 MIMAT0016016 Pongo pygmaeus miR-575                        12      80
esi-miR3456-3p MIMAT0017786 Ectocarpus siliculosus miR3456-3p          12      80
aly-miR402-5p MIMAT0017681 Arabidopsis lyrata miR402-5p                12      80
aly-miR171a-5p MIMAT0017515 Arabidopsis lyrata miR171a-5p              12      80
aly-miR170-5p MIMAT0017513 Arabidopsis lyrata miR170-5p                12      80
hsa-miR-3187-3p MIMAT0015069 Homo sapiens miR-3187-3p                  12      80
hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p                  12      80
hsa-miR-548s MIMAT0014987 Homo sapiens miR-548s                        12      80
mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p                  12      80
eca-miR-1291a MIMAT0012968 Equus caballus miR-1291a                    12      80
bta-miR-2284q MIMAT0011957 Bos taurus miR-2284q                        12      80
bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s                        12      80
bta-miR-1291 MIMAT0009956 Bos taurus miR-1291                          12      80
ptr-miR-663b MIMAT0008310 Pan troglodytes miR-663b                     12      80
ptr-miR-588 MIMAT0008260 Pan troglodytes miR-588                       12      80
ptr-miR-1291 MIMAT0008009 Pan troglodytes miR-1291                     12      80
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2                      12      80
hsa-miR-1291 MIMAT0005881 Homo sapiens miR-1291                        12      80
hsa-miR-663b MIMAT0005867 Homo sapiens miR-663b                        12      80
mtr-miR166d MIMAT0011068 Medicago truncatula miR166d                   12      80
ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p           12      80
hsa-miR-588 MIMAT0003255 Homo sapiens miR-588                          12      80
osa-miR171d-5p MIMAT0022878 Oryza sativa miR171d-5p                    12      80
ath-miR171a-5p MIMAT0031888 Arabidopsis thaliana miR171a-5p            12      80
ath-miR170-5p MIMAT0031887 Arabidopsis thaliana miR170-5p              12      80
>ppc-miR-8255-3p MIMAT0032979 Pristionchus pacificus miR-8255-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggccaa 7
         |||||||
Sbjct: 7 gggccaa 1
>bdi-miR7724b-3p MIMAT0030177 Brachypodium distachyon
         miR7724b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggccaa 7
         |||||||
Sbjct: 7 gggccaa 1
>bdi-miR7724a-3p MIMAT0030175 Brachypodium distachyon
         miR7724a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggccaa 7
         |||||||
Sbjct: 7 gggccaa 1
>mdo-miR-7256-3p MIMAT0028479 Monodelphis domestica miR-7256-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gggccaa 7
         |||||||
Sbjct: 2 gggccaa 8
>bhv1-miR-B9 MIMAT0013972 Bovine herpesvirus miR-B9
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggccaa 7
         |||||||
Sbjct: 7 gggccaa 1
>bta-miR-2284r MIMAT0012010 Bos taurus miR-2284r
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gggccaa 7
         |||||||
Sbjct: 7 gggccaa 1
>efu-miR-9346 MIMAT0035116 Eptesicus fuscus miR-9346
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>cfa-miR-8829 MIMAT0034322 Canis familiaris miR-8829
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>ppc-miR-8358-3p MIMAT0033279 Pristionchus pacificus miR-8358-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 7 ggccaa 2
>ppc-miR-8293-5p MIMAT0033099 Pristionchus pacificus miR-8293-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 3 ggccaa 8
>stu-miR171c-5p MIMAT0031258 Solanum tuberosum miR171c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>stu-miR171a-5p MIMAT0031256 Solanum tuberosum miR171a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon
         miR7723a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>mdo-miR-7250-3p MIMAT0028467 Monodelphis domestica miR-7250-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>hsa-miR-7155-3p MIMAT0028221 Homo sapiens miR-7155-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>mmu-miR-7077-5p MIMAT0028060 Mus musculus miR-7077-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 1 ggccaa 6
>mmu-miR-7034-3p MIMAT0027973 Mus musculus miR-7034-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-6895-5p MIMAT0027690 Homo sapiens miR-6895-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>hsa-miR-6851-3p MIMAT0027603 Homo sapiens miR-6851-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>hvu-miR6200 MIMAT0024827 Hordeum vulgare miR6200
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 7 ggccaa 2
>pgi-miR6135i MIMAT0027250 Panax ginseng miR6135i
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>gma-miR171j-5p MIMAT0021623 Glycine max miR171j-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>dme-miR-4981-3p MIMAT0020214 Drosophila melanogaster
         miR-4981-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>hsa-miR-4745-3p MIMAT0019879 Homo sapiens miR-4745-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-4701-5p MIMAT0019798 Homo sapiens miR-4701-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>pma-miR-4607 MIMAT0019641 Petromyzon marinus miR-4607
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 1 gggcca 6
>tca-miR-3830-3p MIMAT0018691 Tribolium castaneum miR-3830-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>ppy-miR-1291 MIMAT0016213 Pongo pygmaeus miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>ppy-miR-663b MIMAT0016093 Pongo pygmaeus miR-663b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 8 gggcca 3
>ppy-miR-588 MIMAT0016030 Pongo pygmaeus miR-588
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>ppy-miR-575 MIMAT0016016 Pongo pygmaeus miR-575
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 1 gggcca 6
>esi-miR3456-3p MIMAT0017786 Ectocarpus siliculosus miR3456-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>aly-miR402-5p MIMAT0017681 Arabidopsis lyrata miR402-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>aly-miR171a-5p MIMAT0017515 Arabidopsis lyrata miR171a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>aly-miR170-5p MIMAT0017513 Arabidopsis lyrata miR170-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>hsa-miR-3187-3p MIMAT0015069 Homo sapiens miR-3187-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>hsa-miR-3136-3p MIMAT0019203 Homo sapiens miR-3136-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-548s MIMAT0014987 Homo sapiens miR-548s
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 3 ggccaa 8
>mmu-miR-3109-3p MIMAT0014950 Mus musculus miR-3109-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>eca-miR-1291a MIMAT0012968 Equus caballus miR-1291a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>bta-miR-2284q MIMAT0011957 Bos taurus miR-2284q
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 1 ggccaa 6
>bta-miR-2284s MIMAT0011811 Bos taurus miR-2284s
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>bta-miR-1291 MIMAT0009956 Bos taurus miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>ptr-miR-663b MIMAT0008310 Pan troglodytes miR-663b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 8 gggcca 3
>ptr-miR-588 MIMAT0008260 Pan troglodytes miR-588
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>ptr-miR-1291 MIMAT0008009 Pan troglodytes miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-1291 MIMAT0005881 Homo sapiens miR-1291
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-663b MIMAT0005867 Homo sapiens miR-663b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 8 gggcca 3
>mtr-miR166d MIMAT0011068 Medicago truncatula miR166d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 3 gggcca 8
>ppt-miR1221-3p MIMAT0004834 Physcomitrella patens miR1221-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gggcca 6
         ||||||
Sbjct: 6 gggcca 1
>hsa-miR-588 MIMAT0003255 Homo sapiens miR-588
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 6 ggccaa 1
>osa-miR171d-5p MIMAT0022878 Oryza sativa miR171d-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>ath-miR171a-5p MIMAT0031888 Arabidopsis thaliana miR171a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
>ath-miR170-5p MIMAT0031887 Arabidopsis thaliana miR170-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ggccaa 7
         ||||||
Sbjct: 8 ggccaa 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 95
Number of extensions: 89
Number of successful extensions: 60
Number of sequences better than 100.0: 60
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 60
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)