BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-106947b
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8285-5p MIMAT0033075 Pristionchus pacificus miR-8285-5p 14 27
mml-miR-7165-5p MIMAT0028262 Macaca mulatta miR-7165-5p 14 27
hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p 14 27
cel-miR-5550-5p MIMAT0022191 Caenorhabditis elegans miR-5550-5p 14 27
isc-miR-5311 MIMAT0021382 Ixodes scapularis miR-5311 14 27
dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster miR-4948-5p 14 27
hsa-miR-4707-3p MIMAT0019808 Homo sapiens miR-4707-3p 14 27
hsv1-miR-H18 MIMAT0014696 Herpes Simplex miR-H18 14 27
bta-miR-2900 MIMAT0013858 Bos taurus miR-2900 14 27
bta-miR-2899 MIMAT0013857 Bos taurus miR-2899 14 27
bta-miR-2881 MIMAT0013839 Bos taurus miR-2881 14 27
bta-miR-2436-3p MIMAT0012009 Bos taurus miR-2436-3p 14 27
dme-miR-310-5p MIMAT0020836 Drosophila melanogaster miR-310-5p 14 27
>ppc-miR-8285-5p MIMAT0033075 Pristionchus pacificus miR-8285-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggcggg 7
|||||||
Sbjct: 7 gggcggg 1
>mml-miR-7165-5p MIMAT0028262 Macaca mulatta miR-7165-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggcggg 7
|||||||
Sbjct: 1 gggcggg 7
>hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggcggg 7
|||||||
Sbjct: 8 gggcggg 2
>cel-miR-5550-5p MIMAT0022191 Caenorhabditis elegans miR-5550-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggcggg 7
|||||||
Sbjct: 8 gggcggg 2
>isc-miR-5311 MIMAT0021382 Ixodes scapularis miR-5311
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggcgggc 8
|||||||
Sbjct: 8 ggcgggc 2
>dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster
miR-4948-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggcgggc 8
|||||||
Sbjct: 2 ggcgggc 8
>hsa-miR-4707-3p MIMAT0019808 Homo sapiens miR-4707-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggcgggc 8
|||||||
Sbjct: 8 ggcgggc 2
>hsv1-miR-H18 MIMAT0014696 Herpes Simplex miR-H18
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggcggg 7
|||||||
Sbjct: 7 gggcggg 1
>bta-miR-2900 MIMAT0013858 Bos taurus miR-2900
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggcggg 7
|||||||
Sbjct: 2 gggcggg 8
>bta-miR-2899 MIMAT0013857 Bos taurus miR-2899
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggcgggc 8
|||||||
Sbjct: 2 ggcgggc 8
>bta-miR-2881 MIMAT0013839 Bos taurus miR-2881
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggcggg 7
|||||||
Sbjct: 2 gggcggg 8
>bta-miR-2436-3p MIMAT0012009 Bos taurus miR-2436-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggcggg 7
|||||||
Sbjct: 7 gggcggg 1
>dme-miR-310-5p MIMAT0020836 Drosophila melanogaster miR-310-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggcggg 7
|||||||
Sbjct: 2 gggcggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 98
Number of extensions: 85
Number of successful extensions: 65
Number of sequences better than 100.0: 13
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)