BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-4
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p                  14      20
mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p                  14      20
mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p                  14      20
mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p                  14      20
hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p                  14      20
hsa-miR-6799-5p MIMAT0027498 Homo sapiens miR-6799-5p                  14      20
hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910                14      20
oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408            14      20
rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p               14      20
dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p                     14      20
chi-miR-532-3p MIMAT0036271 Capra hircus miR-532-3p                    12      80
chi-miR-30f-3p MIMAT0036131 Capra hircus miR-30f-3p                    12      80
chi-miR-30b-3p MIMAT0036124 Capra hircus miR-30b-3p                    12      80
efu-miR-9290 MIMAT0034948 Eptesicus fuscus miR-9290                    12      80
cfa-miR-8865 MIMAT0034362 Canis familiaris miR-8865                    12      80
gra-miR8771c MIMAT0034154 Gossypium raimondii miR8771c                 12      80
ppc-miR-8264-3p MIMAT0033013 Pristionchus pacificus miR-8264-3p        12      80
ssa-miR-30e-3-3p MIMAT0032613 Salmo salar miR-30e-3-3p                 12      80
hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p                        12      80
mmu-miR-8093 MIMAT0031394 Mus musculus miR-8093                        12      80
prd-miR-7911c-5p MIMAT0030562 Panagrellus redivivus miR-7911c-5p       12      80
bta-miR-7865 MIMAT0030450 Bos taurus miR-7865                          12      80
hsa-miR-1273h-5p MIMAT0030415 Homo sapiens miR-1273h-5p                12      80
osa-miR1437b-5p MIMAT0029953 Oryza sativa miR1437b-5p                  12      80
mdo-miR-30b-3p MIMAT0028551 Monodelphis domestica miR-30b-3p           12      80
dev-miR-D8-5p MIMAT0028178 Duck enteritis miR-D8-5p                    12      80
hsa-miR-7113-3p MIMAT0028124 Homo sapiens miR-7113-3p                  12      80
hsa-miR-7111-5p MIMAT0028119 Homo sapiens miR-7111-5p                  12      80
mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p                  12      80
mmu-miR-7016-5p MIMAT0027936 Mus musculus miR-7016-5p                  12      80
mmu-miR-6971-5p MIMAT0027844 Mus musculus miR-6971-5p                  12      80
mmu-miR-6967-5p MIMAT0027836 Mus musculus miR-6967-5p                  12      80
hsa-miR-6889-5p MIMAT0027678 Homo sapiens miR-6889-5p                  12      80
hsa-miR-6870-5p MIMAT0027640 Homo sapiens miR-6870-5p                  12      80
hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p                  12      80
hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p                12      80
hsa-miR-6779-5p MIMAT0027458 Homo sapiens miR-6779-5p                  12      80
hsa-miR-6778-3p MIMAT0027457 Homo sapiens miR-6778-3p                  12      80
hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p                  12      80
hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p                  12      80
hsa-miR-6763-5p MIMAT0027426 Homo sapiens miR-6763-5p                  12      80
hsa-miR-6749-3p MIMAT0027399 Homo sapiens miR-6749-3p                  12      80
blv-miR-B4-5p MIMAT0027347 Bovine leukemia miR-B4-5p                   12      80
gga-miR-6599-5p MIMAT0025836 Gallus gallus miR-6599-5p                 12      80
ppe-miR482d-3p MIMAT0027315 Prunus persica miR482d-3p                  12      80
bta-miR-149-3p MIMAT0024571 Bos taurus miR-149-3p                      12      80
cgr-miR-532-3p MIMAT0023982 Cricetulus griseus miR-532-3p              12      80
cgr-miR-149-3p MIMAT0023781 Cricetulus griseus miR-149-3p              12      80
hsa-miR-6090 MIMAT0023715 Homo sapiens miR-6090                        12      80
hsa-miR-5698 MIMAT0022491 Homo sapiens miR-5698                        12      80
mtr-miR5276 MIMAT0021314 Medicago truncatula miR5276                   12      80
hsa-miR-4756-5p MIMAT0019899 Homo sapiens miR-4756-5p                  12      80
hsa-miR-4739 MIMAT0019868 Homo sapiens miR-4739                        12      80
hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p                  12      80
pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611                  12      80
mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971                        12      80
hsa-miR-3689d MIMAT0019008 Homo sapiens miR-3689d                      12      80
hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c                      12      80
hsa-miR-3689b-3p MIMAT0018181 Homo sapiens miR-3689b-3p                12      80
ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739                      12      80
hsa-miR-3689a-3p MIMAT0018118 Homo sapiens miR-3689a-3p                12      80
rno-miR-3584-5p MIMAT0017875 Rattus norvegicus miR-3584-5p             12      80
rno-miR-3541 MIMAT0017795 Rattus norvegicus miR-3541                   12      80
ppy-miR-532-3p MIMAT0015988 Pongo pygmaeus miR-532-3p                  12      80
hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p                12      80
ssc-miR-532-3p MIMAT0013941 Sus scrofa miR-532-3p                      12      80
eca-miR-532-3p MIMAT0013236 Equus caballus miR-532-3p                  12      80
bta-miR-2394 MIMAT0011947 Bos taurus miR-2394                          12      80
bta-miR-2343 MIMAT0011878 Bos taurus miR-2343                          12      80
hsa-miR-2116-3p MIMAT0011161 Homo sapiens miR-2116-3p                  12      80
mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p                  12      80
mmu-miR-1943-5p MIMAT0009408 Mus musculus miR-1943-5p                  12      80
ptr-miR-920 MIMAT0008336 Pan troglodytes miR-920                       12      80
ptr-miR-532 MIMAT0008213 Pan troglodytes miR-532                       12      80
mmu-miR-1894-5p MIMAT0007877 Mus musculus miR-1894-5p                  12      80
ssc-miR-30b-3p MIMAT0015269 Sus scrofa miR-30b-3p                      12      80
mml-miR-920 MIMAT0006532 Macaca mulatta miR-920                        12      80
mml-miR-612 MIMAT0006464 Macaca mulatta miR-612                        12      80
mml-miR-532-3p MIMAT0006404 Macaca mulatta miR-532-3p                  12      80
mml-miR-505-5p MIMAT0026892 Macaca mulatta miR-505-5p                  12      80
mml-miR-149-3p MIMAT0026827 Macaca mulatta miR-149-3p                  12      80
gga-miR-1773-5p MIMAT0007683 Gallus gallus miR-1773-5p                 12      80
gga-miR-1614-3p MIMAT0007481 Gallus gallus miR-1614-3p                 12      80
pta-miR482d MIMAT0006015 Pinus taeda miR482d                           12      80
oan-miR-30b-3p MIMAT0007044 Ornithorhynchus anatinus miR-30b-3p        12      80
hsa-miR-1321 MIMAT0005952 Homo sapiens miR-1321                        12      80
rno-miR-532-3p MIMAT0005323 Rattus norvegicus miR-532-3p               12      80
ppt-miR1039-3p MIMAT0005149 Physcomitrella patens miR1039-3p           12      80
hsa-miR-920 MIMAT0004970 Homo sapiens miR-920                          12      80
kshv-miR-K12-12-3p MIMAT0015238 Kaposi sarcoma-associated miR-K1...    12      80
bta-miR-30b-3p MIMAT0012534 Bos taurus miR-30b-3p                      12      80
mmu-miR-532-3p MIMAT0004781 Mus musculus miR-532-3p                    12      80
hsa-miR-532-3p MIMAT0004780 Homo sapiens miR-532-3p                    12      80
mml-miR-30b-3p MIMAT0026563 Macaca mulatta miR-30b-3p                  12      80
hsa-miR-30b-3p MIMAT0004589 Homo sapiens miR-30b-3p                    12      80
mmu-miR-149-3p MIMAT0016990 Mus musculus miR-149-3p                    12      80
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 1 ggggagg 7
>hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>hsa-miR-6799-5p MIMAT0027498 Homo sapiens miR-6799-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 1 ggggagg 7
>hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 7 ggggagg 1
>oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggagg 7
         |||||||
Sbjct: 2 ggggagg 8
>chi-miR-532-3p MIMAT0036271 Capra hircus miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>chi-miR-30f-3p MIMAT0036131 Capra hircus miR-30f-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>chi-miR-30b-3p MIMAT0036124 Capra hircus miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>efu-miR-9290 MIMAT0034948 Eptesicus fuscus miR-9290
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 8 ggggag 3
>cfa-miR-8865 MIMAT0034362 Canis familiaris miR-8865
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>gra-miR8771c MIMAT0034154 Gossypium raimondii miR8771c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>ppc-miR-8264-3p MIMAT0033013 Pristionchus pacificus miR-8264-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 1 gggagg 6
>ssa-miR-30e-3-3p MIMAT0032613 Salmo salar miR-30e-3-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>mmu-miR-8093 MIMAT0031394 Mus musculus miR-8093
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>prd-miR-7911c-5p MIMAT0030562 Panagrellus redivivus
         miR-7911c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 8 gggagg 3
>bta-miR-7865 MIMAT0030450 Bos taurus miR-7865
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-1273h-5p MIMAT0030415 Homo sapiens miR-1273h-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>osa-miR1437b-5p MIMAT0029953 Oryza sativa miR1437b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 1 gggagg 6
>mdo-miR-30b-3p MIMAT0028551 Monodelphis domestica miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>dev-miR-D8-5p MIMAT0028178 Duck enteritis miR-D8-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 8 gggagg 3
>hsa-miR-7113-3p MIMAT0028124 Homo sapiens miR-7113-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>hsa-miR-7111-5p MIMAT0028119 Homo sapiens miR-7111-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>mmu-miR-7016-5p MIMAT0027936 Mus musculus miR-7016-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>mmu-miR-6971-5p MIMAT0027844 Mus musculus miR-6971-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>mmu-miR-6967-5p MIMAT0027836 Mus musculus miR-6967-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-6889-5p MIMAT0027678 Homo sapiens miR-6889-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hsa-miR-6870-5p MIMAT0027640 Homo sapiens miR-6870-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 6 ggggag 1
>hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-6779-5p MIMAT0027458 Homo sapiens miR-6779-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-6778-3p MIMAT0027457 Homo sapiens miR-6778-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 8 gggagg 3
>hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 6 ggggag 1
>hsa-miR-6763-5p MIMAT0027426 Homo sapiens miR-6763-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hsa-miR-6749-3p MIMAT0027399 Homo sapiens miR-6749-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 8 gggagg 3
>blv-miR-B4-5p MIMAT0027347 Bovine leukemia miR-B4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>gga-miR-6599-5p MIMAT0025836 Gallus gallus miR-6599-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>ppe-miR482d-3p MIMAT0027315 Prunus persica miR482d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>bta-miR-149-3p MIMAT0024571 Bos taurus miR-149-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>cgr-miR-532-3p MIMAT0023982 Cricetulus griseus miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>cgr-miR-149-3p MIMAT0023781 Cricetulus griseus miR-149-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-6090 MIMAT0023715 Homo sapiens miR-6090
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 1 ggggag 6
>hsa-miR-5698 MIMAT0022491 Homo sapiens miR-5698
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>mtr-miR5276 MIMAT0021314 Medicago truncatula miR5276
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hsa-miR-4756-5p MIMAT0019899 Homo sapiens miR-4756-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-4739 MIMAT0019868 Homo sapiens miR-4739
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 1 gggagg 6
>mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 6 ggggag 1
>hsa-miR-3689d MIMAT0019008 Homo sapiens miR-3689d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 1 gggagg 6
>hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-3689b-3p MIMAT0018181 Homo sapiens miR-3689b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-3689a-3p MIMAT0018118 Homo sapiens miR-3689a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>rno-miR-3584-5p MIMAT0017875 Rattus norvegicus miR-3584-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 1 gggagg 6
>rno-miR-3541 MIMAT0017795 Rattus norvegicus miR-3541
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 8 gggagg 3
>ppy-miR-532-3p MIMAT0015988 Pongo pygmaeus miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>ssc-miR-532-3p MIMAT0013941 Sus scrofa miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>eca-miR-532-3p MIMAT0013236 Equus caballus miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>bta-miR-2394 MIMAT0011947 Bos taurus miR-2394
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 8 ggggag 3
>bta-miR-2343 MIMAT0011878 Bos taurus miR-2343
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>hsa-miR-2116-3p MIMAT0011161 Homo sapiens miR-2116-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>mmu-miR-1943-5p MIMAT0009408 Mus musculus miR-1943-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>ptr-miR-920 MIMAT0008336 Pan troglodytes miR-920
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 1 ggggag 6
>ptr-miR-532 MIMAT0008213 Pan troglodytes miR-532
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>mmu-miR-1894-5p MIMAT0007877 Mus musculus miR-1894-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 8 ggggag 3
>ssc-miR-30b-3p MIMAT0015269 Sus scrofa miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>mml-miR-920 MIMAT0006532 Macaca mulatta miR-920
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 1 ggggag 6
>mml-miR-612 MIMAT0006464 Macaca mulatta miR-612
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>mml-miR-532-3p MIMAT0006404 Macaca mulatta miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>mml-miR-505-5p MIMAT0026892 Macaca mulatta miR-505-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 1 ggggag 6
>mml-miR-149-3p MIMAT0026827 Macaca mulatta miR-149-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>gga-miR-1773-5p MIMAT0007683 Gallus gallus miR-1773-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>gga-miR-1614-3p MIMAT0007481 Gallus gallus miR-1614-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>pta-miR482d MIMAT0006015 Pinus taeda miR482d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 7 gggagg 2
>oan-miR-30b-3p MIMAT0007044 Ornithorhynchus anatinus miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-1321 MIMAT0005952 Homo sapiens miR-1321
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>rno-miR-532-3p MIMAT0005323 Rattus norvegicus miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>ppt-miR1039-3p MIMAT0005149 Physcomitrella patens miR1039-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 1 ggggag 6
>hsa-miR-920 MIMAT0004970 Homo sapiens miR-920
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 1 ggggag 6
>kshv-miR-K12-12-3p MIMAT0015238 Kaposi sarcoma-associated
         miR-K12-12-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggggag 6
         ||||||
Sbjct: 3 ggggag 8
>bta-miR-30b-3p MIMAT0012534 Bos taurus miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>mmu-miR-532-3p MIMAT0004781 Mus musculus miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>hsa-miR-532-3p MIMAT0004780 Homo sapiens miR-532-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 6 gggagg 1
>mml-miR-30b-3p MIMAT0026563 Macaca mulatta miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>hsa-miR-30b-3p MIMAT0004589 Homo sapiens miR-30b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
>mmu-miR-149-3p MIMAT0016990 Mus musculus miR-149-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggagg 7
         ||||||
Sbjct: 3 gggagg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 132
Number of extensions: 122
Number of successful extensions: 96
Number of sequences better than 100.0: 96
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 96
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)