BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart6-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175 14 20
cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932 14 20
ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p 14 20
ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869 12 80
chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p 12 80
dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster miR-9382-3p 12 80
eca-miR-9117 MIMAT0034666 Equus caballus miR-9117 12 80
cfa-miR-769 MIMAT0034400 Canis familiaris miR-769 12 80
ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p 12 80
stu-miR8001b-5p MIMAT0030917 Solanum tuberosum miR8001b-5p 12 80
prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p 12 80
prd-miR-7881-5p MIMAT0030520 Panagrellus redivivus miR-7881-5p 12 80
lja-miR7533b MIMAT0029358 Lotus japonicus miR7533b 12 80
lja-miR7533a MIMAT0029357 Lotus japonicus miR7533a 12 80
mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p 12 80
dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p 12 80
dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p 12 80
hsa-miR-6866-3p MIMAT0027633 Homo sapiens miR-6866-3p 12 80
hsa-miR-6857-5p MIMAT0027614 Homo sapiens miR-6857-5p 12 80
hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p 12 80
blv-miR-B3-5p MIMAT0025862 Bovine leukemia miR-B3-5p 12 80
mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364 12 80
osa-miR6250 MIMAT0024873 Oryza sativa miR6250 12 80
osa-miR6246 MIMAT0024867 Oryza sativa miR6246 12 80
mse-miR-450 MIMAT0024497 Manduca sexta miR-450 12 80
mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b 12 80
aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453 12 80
mtr-miR5284h MIMAT0021342 Medicago truncatula miR5284h 12 80
mtr-miR5284b MIMAT0021336 Medicago truncatula miR5284b 12 80
mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a 12 80
hsa-miR-5010-5p MIMAT0021043 Homo sapiens miR-5010-5p 12 80
dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster miR-4958-5p 12 80
hsa-miR-4525 MIMAT0019064 Homo sapiens miR-4525 12 80
hvu-miR168-3p MIMAT0018216 Hordeum vulgare miR168-3p 12 80
tca-miR-3826-3p MIMAT0018681 Tribolium castaneum miR-3826-3p 12 80
hsa-miR-2355-5p MIMAT0016895 Homo sapiens miR-2355-5p 12 80
ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p 12 80
ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p 12 80
tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p 12 80
ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p 12 80
ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p 12 80
eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p 12 80
bmo-miR-2770-3p MIMAT0013652 Bombyx mori miR-2770-3p 12 80
bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p 12 80
dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster miR-2492-5p 12 80
cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p 12 80
ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b 12 80
mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p 12 80
mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p 12 80
hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p 12 80
osa-miR815c MIMAT0004060 Oryza sativa miR815c 12 80
osa-miR815b MIMAT0004059 Oryza sativa miR815b 12 80
osa-miR815a MIMAT0004058 Oryza sativa miR815a 12 80
mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p 12 80
hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p 12 80
hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p 12 80
hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p 12 80
kshv-miR-K12-7-3p MIMAT0002187 Kaposi sarcoma-associated miR-K12... 12 80
osa-miR168a-3p MIMAT0015122 Oryza sativa miR168a-3p 12 80
>ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggggatc 7
|||||||
Sbjct: 7 ggggatc 1
>cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggggatc 7
|||||||
Sbjct: 1 ggggatc 7
>ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggggatc 7
|||||||
Sbjct: 2 ggggatc 8
>ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster
miR-9382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>eca-miR-9117 MIMAT0034666 Equus caballus miR-9117
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>cfa-miR-769 MIMAT0034400 Canis familiaris miR-769
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 1 gggatc 6
>stu-miR8001b-5p MIMAT0030917 Solanum tuberosum miR8001b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 8 gggatc 3
>prd-miR-7881-5p MIMAT0030520 Panagrellus redivivus miR-7881-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 7 gggatc 2
>lja-miR7533b MIMAT0029358 Lotus japonicus miR7533b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>lja-miR7533a MIMAT0029357 Lotus japonicus miR7533a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 8 gggatc 3
>dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 8 ggggat 3
>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 1 gggatc 6
>hsa-miR-6866-3p MIMAT0027633 Homo sapiens miR-6866-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 6 gggatc 1
>hsa-miR-6857-5p MIMAT0027614 Homo sapiens miR-6857-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 8 ggggat 3
>blv-miR-B3-5p MIMAT0025862 Bovine leukemia miR-B3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 8 gggatc 3
>osa-miR6250 MIMAT0024873 Oryza sativa miR6250
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 1 ggggat 6
>osa-miR6246 MIMAT0024867 Oryza sativa miR6246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>mse-miR-450 MIMAT0024497 Manduca sexta miR-450
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 1 gggatc 6
>mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>mtr-miR5284h MIMAT0021342 Medicago truncatula miR5284h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>mtr-miR5284b MIMAT0021336 Medicago truncatula miR5284b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>hsa-miR-5010-5p MIMAT0021043 Homo sapiens miR-5010-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster
miR-4958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 1 gggatc 6
>hsa-miR-4525 MIMAT0019064 Homo sapiens miR-4525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>hvu-miR168-3p MIMAT0018216 Hordeum vulgare miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 6 gggatc 1
>tca-miR-3826-3p MIMAT0018681 Tribolium castaneum miR-3826-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 8 ggggat 3
>hsa-miR-2355-5p MIMAT0016895 Homo sapiens miR-2355-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>bmo-miR-2770-3p MIMAT0013652 Bombyx mori miR-2770-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 8 ggggat 3
>bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster
miR-2492-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>osa-miR815c MIMAT0004060 Oryza sativa miR815c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>osa-miR815b MIMAT0004059 Oryza sativa miR815b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>osa-miR815a MIMAT0004058 Oryza sativa miR815a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 8 gggatc 3
>hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatc 7
||||||
Sbjct: 3 gggatc 8
>hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 1 ggggat 6
>hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>kshv-miR-K12-7-3p MIMAT0002187 Kaposi sarcoma-associated
miR-K12-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 7 gggatc 2
>osa-miR168a-3p MIMAT0015122 Oryza sativa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatc 7
||||||
Sbjct: 6 gggatc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 83
Number of extensions: 80
Number of successful extensions: 59
Number of sequences better than 100.0: 59
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 59
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
