BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p 14 20
hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p 14 20
tgu-miR-2954-3p MIMAT0014474 Taeniopygia guttata miR-2954-3p 14 20
tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p 14 20
gga-miR-2954 MIMAT0014448 Gallus gallus miR-2954 14 20
hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p 14 20
ame-miR-9875 MIMAT0037279 Apis mellifera miR-9875 12 80
ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869 12 80
ata-miR408-5p MIMAT0037188 Aegilops tauschii miR408-5p 12 80
tch-miR-324-5p MIMAT0036596 Tupaia chinensis miR-324-5p 12 80
tch-miR-188-5p MIMAT0036491 Tupaia chinensis miR-188-5p 12 80
chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p 12 80
chi-miR-324-5p MIMAT0036135 Capra hircus miR-324-5p 12 80
chi-miR-188-5p MIMAT0036013 Capra hircus miR-188-5p 12 80
sly-miR166c-5p MIMAT0035443 Solanum lycopersicum miR166c-5p 12 80
dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster miR-9382-3p 12 80
efu-miR-188 MIMAT0035151 Eptesicus fuscus miR-188 12 80
stu-miR8001b-5p MIMAT0030917 Solanum tuberosum miR8001b-5p 12 80
lja-miR7533b MIMAT0029358 Lotus japonicus miR7533b 12 80
lja-miR7533a MIMAT0029357 Lotus japonicus miR7533a 12 80
mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p 12 80
hsa-miR-6857-5p MIMAT0027614 Homo sapiens miR-6857-5p 12 80
hsa-miR-6757-5p MIMAT0027414 Homo sapiens miR-6757-5p 12 80
hsa-miR-6728-5p MIMAT0027357 Homo sapiens miR-6728-5p 12 80
blv-miR-B3-5p MIMAT0025862 Bovine leukemia miR-B3-5p 12 80
gga-miR-6547-5p MIMAT0025597 Gallus gallus miR-6547-5p 12 80
prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2 12 80
osa-miR6250 MIMAT0024873 Oryza sativa miR6250 12 80
osa-miR6246 MIMAT0024867 Oryza sativa miR6246 12 80
ppy-miR-1193 MIMAT0024369 Pongo pygmaeus miR-1193 12 80
ggo-miR-188 MIMAT0024277 Gorilla gorilla miR-188 12 80
ggo-miR-1193 MIMAT0024256 Gorilla gorilla miR-1193 12 80
ggo-miR-324 MIMAT0024130 Gorilla gorilla miR-324 12 80
cgr-miR-324-5p MIMAT0023909 Cricetulus griseus miR-324-5p 12 80
cgr-miR-30b-3p MIMAT0023897 Cricetulus griseus miR-30b-3p 12 80
cgr-miR-188 MIMAT0023816 Cricetulus griseus miR-188 12 80
aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453 12 80
aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417 12 80
bdi-miR408-5p MIMAT0020550 Brachypodium distachyon miR408-5p 12 80
hsa-miR-5010-5p MIMAT0021043 Homo sapiens miR-5010-5p 12 80
cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932 12 80
oar-miR-1193-5p MIMAT0019269 Ovis aries miR-1193-5p 12 80
hsa-miR-4525 MIMAT0019064 Homo sapiens miR-4525 12 80
tca-miR-3826-3p MIMAT0018681 Tribolium castaneum miR-3826-3p 12 80
hsa-miR-2355-5p MIMAT0016895 Homo sapiens miR-2355-5p 12 80
ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p 12 80
ppy-miR-324-5p MIMAT0015827 Pongo pygmaeus miR-324-5p 12 80
hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193 12 80
tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p 12 80
tgu-miR-2974 MIMAT0014484 Taeniopygia guttata miR-2974 12 80
ssc-miR-324 MIMAT0013957 Sus scrofa miR-324 12 80
ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p 12 80
eca-miR-188-5p MIMAT0013198 Equus caballus miR-188-5p 12 80
eca-miR-324-5p MIMAT0013033 Equus caballus miR-324-5p 12 80
hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11 12 80
bmo-miR-2836 MIMAT0013750 Bombyx mori miR-2836 12 80
bmo-miR-2770-3p MIMAT0013652 Bombyx mori miR-2770-3p 12 80
bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p 12 80
cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p 12 80
cfa-miR-324 MIMAT0009896 Canis familiaris miR-324 12 80
cfa-miR-188 MIMAT0009880 Canis familiaris miR-188 12 80
bta-miR-324 MIMAT0009285 Bos taurus miR-324 12 80
bta-miR-188 MIMAT0009249 Bos taurus miR-188 12 80
mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p 12 80
mml-miR-324-5p MIMAT0006266 Macaca mulatta miR-324-5p 12 80
oan-miR-1421l-2-3p MIMAT0009181 Ornithorhynchus anatinus miR-142... 12 80
oan-miR-1400-3p MIMAT0007206 Ornithorhynchus anatinus miR-1400-3p 12 80
oan-miR-1421n-2-3p MIMAT0009168 Ornithorhynchus anatinus miR-142... 12 80
oan-miR-1421s-3p MIMAT0007085 Ornithorhynchus anatinus miR-1421s-3p 12 80
oan-miR-1421q-3p MIMAT0007081 Ornithorhynchus anatinus miR-1421q-3p 12 80
rno-miR-188-5p MIMAT0005301 Rattus norvegicus miR-188-5p 12 80
osa-miR815c MIMAT0004060 Oryza sativa miR815c 12 80
osa-miR815b MIMAT0004059 Oryza sativa miR815b 12 80
osa-miR815a MIMAT0004058 Oryza sativa miR815a 12 80
hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p 12 80
ppa-miR-188 MIMAT0002311 Pan paniscus miR-188 12 80
mne-miR-188 MIMAT0002310 Macaca nemestrina miR-188 12 80
ppy-miR-188 MIMAT0002309 Pongo pygmaeus miR-188 12 80
ptr-miR-188 MIMAT0002308 Pan troglodytes miR-188 12 80
mml-miR-188-5p MIMAT0002307 Macaca mulatta miR-188-5p 12 80
osa-miR408-5p MIMAT0022884 Oryza sativa miR408-5p 12 80
rno-miR-30b-3p MIMAT0004721 Rattus norvegicus miR-30b-3p 12 80
hsa-miR-324-5p MIMAT0000761 Homo sapiens miR-324-5p 12 80
mmu-miR-324-5p MIMAT0000555 Mus musculus miR-324-5p 12 80
rno-miR-324-5p MIMAT0000553 Rattus norvegicus miR-324-5p 12 80
hsa-miR-188-5p MIMAT0000457 Homo sapiens miR-188-5p 12 80
mmu-miR-188-5p MIMAT0000217 Mus musculus miR-188-5p 12 80
mmu-miR-30b-3p MIMAT0004524 Mus musculus miR-30b-3p 12 80
>dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggggatg 7
|||||||
Sbjct: 8 ggggatg 2
>hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggggatg 7
|||||||
Sbjct: 8 ggggatg 2
>tgu-miR-2954-3p MIMAT0014474 Taeniopygia guttata miR-2954-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggggatg 7
|||||||
Sbjct: 7 ggggatg 1
>tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggggatg 7
|||||||
Sbjct: 7 ggggatg 1
>gga-miR-2954 MIMAT0014448 Gallus gallus miR-2954
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggggatg 7
|||||||
Sbjct: 7 ggggatg 1
>hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggggatg 7
|||||||
Sbjct: 1 ggggatg 7
>ame-miR-9875 MIMAT0037279 Apis mellifera miR-9875
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ata-miR408-5p MIMAT0037188 Aegilops tauschii miR408-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>tch-miR-324-5p MIMAT0036596 Tupaia chinensis miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>tch-miR-188-5p MIMAT0036491 Tupaia chinensis miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>chi-miR-324-5p MIMAT0036135 Capra hircus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>chi-miR-188-5p MIMAT0036013 Capra hircus miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>sly-miR166c-5p MIMAT0035443 Solanum lycopersicum miR166c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 1 gggatg 6
>dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster
miR-9382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>efu-miR-188 MIMAT0035151 Eptesicus fuscus miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>stu-miR8001b-5p MIMAT0030917 Solanum tuberosum miR8001b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>lja-miR7533b MIMAT0029358 Lotus japonicus miR7533b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>lja-miR7533a MIMAT0029357 Lotus japonicus miR7533a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>hsa-miR-6857-5p MIMAT0027614 Homo sapiens miR-6857-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>hsa-miR-6757-5p MIMAT0027414 Homo sapiens miR-6757-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>hsa-miR-6728-5p MIMAT0027357 Homo sapiens miR-6728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>blv-miR-B3-5p MIMAT0025862 Bovine leukemia miR-B3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>gga-miR-6547-5p MIMAT0025597 Gallus gallus miR-6547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>osa-miR6250 MIMAT0024873 Oryza sativa miR6250
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 1 ggggat 6
>osa-miR6246 MIMAT0024867 Oryza sativa miR6246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ppy-miR-1193 MIMAT0024369 Pongo pygmaeus miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 1 gggatg 6
>ggo-miR-188 MIMAT0024277 Gorilla gorilla miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>ggo-miR-1193 MIMAT0024256 Gorilla gorilla miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 1 gggatg 6
>ggo-miR-324 MIMAT0024130 Gorilla gorilla miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>cgr-miR-324-5p MIMAT0023909 Cricetulus griseus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>cgr-miR-30b-3p MIMAT0023897 Cricetulus griseus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>cgr-miR-188 MIMAT0023816 Cricetulus griseus miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 7 gggatg 2
>bdi-miR408-5p MIMAT0020550 Brachypodium distachyon miR408-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>hsa-miR-5010-5p MIMAT0021043 Homo sapiens miR-5010-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 1 ggggat 6
>oar-miR-1193-5p MIMAT0019269 Ovis aries miR-1193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 1 gggatg 6
>hsa-miR-4525 MIMAT0019064 Homo sapiens miR-4525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>tca-miR-3826-3p MIMAT0018681 Tribolium castaneum miR-3826-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 8 ggggat 3
>hsa-miR-2355-5p MIMAT0016895 Homo sapiens miR-2355-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 6 ggggat 1
>ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ppy-miR-324-5p MIMAT0015827 Pongo pygmaeus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 1 gggatg 6
>tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>tgu-miR-2974 MIMAT0014484 Taeniopygia guttata miR-2974
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>ssc-miR-324 MIMAT0013957 Sus scrofa miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>eca-miR-188-5p MIMAT0013198 Equus caballus miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>eca-miR-324-5p MIMAT0013033 Equus caballus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 1 gggatg 6
>bmo-miR-2836 MIMAT0013750 Bombyx mori miR-2836
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>bmo-miR-2770-3p MIMAT0013652 Bombyx mori miR-2770-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggat 6
||||||
Sbjct: 8 ggggat 3
>bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>cfa-miR-324 MIMAT0009896 Canis familiaris miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>cfa-miR-188 MIMAT0009880 Canis familiaris miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>bta-miR-324 MIMAT0009285 Bos taurus miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>bta-miR-188 MIMAT0009249 Bos taurus miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>mml-miR-324-5p MIMAT0006266 Macaca mulatta miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>oan-miR-1421l-2-3p MIMAT0009181 Ornithorhynchus anatinus
miR-1421l-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>oan-miR-1400-3p MIMAT0007206 Ornithorhynchus anatinus
miR-1400-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>oan-miR-1421n-2-3p MIMAT0009168 Ornithorhynchus anatinus
miR-1421n-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>oan-miR-1421s-3p MIMAT0007085 Ornithorhynchus anatinus
miR-1421s-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>oan-miR-1421q-3p MIMAT0007081 Ornithorhynchus anatinus
miR-1421q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>rno-miR-188-5p MIMAT0005301 Rattus norvegicus miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>osa-miR815c MIMAT0004060 Oryza sativa miR815c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>osa-miR815b MIMAT0004059 Oryza sativa miR815b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>osa-miR815a MIMAT0004058 Oryza sativa miR815a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggat 6
||||||
Sbjct: 3 ggggat 8
>ppa-miR-188 MIMAT0002311 Pan paniscus miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>mne-miR-188 MIMAT0002310 Macaca nemestrina miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>ppy-miR-188 MIMAT0002309 Pongo pygmaeus miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>ptr-miR-188 MIMAT0002308 Pan troglodytes miR-188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>mml-miR-188-5p MIMAT0002307 Macaca mulatta miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>osa-miR408-5p MIMAT0022884 Oryza sativa miR408-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>rno-miR-30b-3p MIMAT0004721 Rattus norvegicus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
>hsa-miR-324-5p MIMAT0000761 Homo sapiens miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>mmu-miR-324-5p MIMAT0000555 Mus musculus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>rno-miR-324-5p MIMAT0000553 Rattus norvegicus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 8 gggatg 3
>hsa-miR-188-5p MIMAT0000457 Homo sapiens miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>mmu-miR-188-5p MIMAT0000217 Mus musculus miR-188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggatg 7
||||||
Sbjct: 6 gggatg 1
>mmu-miR-30b-3p MIMAT0004524 Mus musculus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggatg 7
||||||
Sbjct: 3 gggatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 105
Number of successful extensions: 88
Number of sequences better than 100.0: 88
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 88
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
