BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pyv-miR-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-2041b-5p MIMAT0035381 Nematostella vectensis miR-2041b-5p 12 80
mdo-miR-7363-3p MIMAT0028739 Monodelphis domestica miR-7363-3p 12 80
mmu-miR-6910-5p MIMAT0027720 Mus musculus miR-6910-5p 12 80
hsa-miR-6841-5p MIMAT0027584 Homo sapiens miR-6841-5p 12 80
hsa-miR-6835-5p MIMAT0027570 Homo sapiens miR-6835-5p 12 80
ame-miR-6060 MIMAT0023684 Apis mellifera miR-6060 12 80
hco-miR-5890b-3p MIMAT0023371 Haemonchus contortus miR-5890b-3p 12 80
hco-miR-5890a MIMAT0023325 Haemonchus contortus miR-5890a 12 80
hco-miR-5884 MIMAT0023316 Haemonchus contortus miR-5884 12 80
tur-miR-5734-3p MIMAT0023075 Tetranychus urticae miR-5734-3p 12 80
bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903 12 80
pma-miR-4589 MIMAT0019622 Petromyzon marinus miR-4589 12 80
tca-miR-3840-5p MIMAT0018724 Tribolium castaneum miR-3840-5p 12 80
tca-miR-3815-5p MIMAT0018654 Tribolium castaneum miR-3815-5p 12 80
mghv-miR-M1-12-5p MIMAT0018170 Mouse gammaherpesvirus miR-M1-12-5p 12 80
ppy-miR-1225-5p MIMAT0016160 Pongo pygmaeus miR-1225-5p 12 80
ppc-miR-2272 MIMAT0011729 Pristionchus pacificus miR-2272 12 80
ppc-miR-2267 MIMAT0011704 Pristionchus pacificus miR-2267 12 80
sbi-miR529 MIMAT0011384 Sorghum bicolor miR529 12 80
oan-miR-1362-5p MIMAT0007023 Ornithorhynchus anatinus miR-1362-5p 12 80
mml-miR-1225-5p MIMAT0005574 Macaca mulatta miR-1225-5p 12 80
hsa-miR-1225-5p MIMAT0005572 Homo sapiens miR-1225-5p 12 80
dme-miR-965-5p MIMAT0020861 Drosophila melanogaster miR-965-5p 12 80
osa-miR529a MIMAT0002885 Oryza sativa miR529a 12 80
hsa-miR-503-3p MIMAT0022925 Homo sapiens miR-503-3p 12 80
zma-miR399c-5p MIMAT0015170 Zea mays miR399c-5p 12 80
>nve-miR-2041b-5p MIMAT0035381 Nematostella vectensis
miR-2041b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>mdo-miR-7363-3p MIMAT0028739 Monodelphis domestica miR-7363-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggtac 7
||||||
Sbjct: 6 gggtac 1
>mmu-miR-6910-5p MIMAT0027720 Mus musculus miR-6910-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>hsa-miR-6841-5p MIMAT0027584 Homo sapiens miR-6841-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>hsa-miR-6835-5p MIMAT0027570 Homo sapiens miR-6835-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>ame-miR-6060 MIMAT0023684 Apis mellifera miR-6060
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>hco-miR-5890b-3p MIMAT0023371 Haemonchus contortus miR-5890b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggta 6
||||||
Sbjct: 6 ggggta 1
>hco-miR-5890a MIMAT0023325 Haemonchus contortus miR-5890a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggta 6
||||||
Sbjct: 6 ggggta 1
>hco-miR-5884 MIMAT0023316 Haemonchus contortus miR-5884
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>tur-miR-5734-3p MIMAT0023075 Tetranychus urticae miR-5734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggta 6
||||||
Sbjct: 6 ggggta 1
>pma-miR-4589 MIMAT0019622 Petromyzon marinus miR-4589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>tca-miR-3840-5p MIMAT0018724 Tribolium castaneum miR-3840-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>tca-miR-3815-5p MIMAT0018654 Tribolium castaneum miR-3815-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 3 ggggta 8
>mghv-miR-M1-12-5p MIMAT0018170 Mouse gammaherpesvirus
miR-M1-12-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>ppy-miR-1225-5p MIMAT0016160 Pongo pygmaeus miR-1225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>ppc-miR-2272 MIMAT0011729 Pristionchus pacificus miR-2272
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>ppc-miR-2267 MIMAT0011704 Pristionchus pacificus miR-2267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>sbi-miR529 MIMAT0011384 Sorghum bicolor miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggtac 7
||||||
Sbjct: 8 gggtac 3
>oan-miR-1362-5p MIMAT0007023 Ornithorhynchus anatinus
miR-1362-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggggta 6
||||||
Sbjct: 6 ggggta 1
>mml-miR-1225-5p MIMAT0005574 Macaca mulatta miR-1225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>hsa-miR-1225-5p MIMAT0005572 Homo sapiens miR-1225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 3 gggtac 8
>dme-miR-965-5p MIMAT0020861 Drosophila melanogaster miR-965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 1 ggggta 6
>osa-miR529a MIMAT0002885 Oryza sativa miR529a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggtac 7
||||||
Sbjct: 8 gggtac 3
>hsa-miR-503-3p MIMAT0022925 Homo sapiens miR-503-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggggta 6
||||||
Sbjct: 1 ggggta 6
>zma-miR399c-5p MIMAT0015170 Zea mays miR399c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggtac 7
||||||
Sbjct: 1 gggtac 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 34
Number of extensions: 34
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)