BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h10
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-4466 MIMAT0018993 Homo sapiens miR-4466 16 6.9
hsv2-miR-H10 MIMAT0014353 Herpes Simplex miR-H10 16 6.9
pxy-miR-8531 MIMAT0033774 Plutella xylostella miR-8531 14 27
ppc-miR-8286b-5p MIMAT0033240 Pristionchus pacificus miR-8286b-5p 14 27
ppc-miR-8286a-5p MIMAT0033077 Pristionchus pacificus miR-8286a-5p 14 27
ggo-miR-675b MIMAT0024305 Gorilla gorilla miR-675b 14 27
ppy-miR-675a MIMAT0016098 Pongo pygmaeus miR-675a 14 27
mmu-miR-3093-5p MIMAT0014907 Mus musculus miR-3093-5p 14 27
rno-miR-675-5p MIMAT0012841 Rattus norvegicus miR-675-5p 14 27
mml-miR-675-5p MIMAT0006507 Macaca mulatta miR-675-5p 14 27
hsa-miR-675-5p MIMAT0004284 Homo sapiens miR-675-5p 14 27
mmu-miR-675-5p MIMAT0003725 Mus musculus miR-675-5p 14 27
cel-miR-354-5p MIMAT0031894 Caenorhabditis elegans miR-354-5p 14 27
>hsa-miR-4466 MIMAT0018993 Homo sapiens miR-4466
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggtgcgg 8
||||||||
Sbjct: 1 gggtgcgg 8
>hsv2-miR-H10 MIMAT0014353 Herpes Simplex miR-H10
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggtgcgg 8
||||||||
Sbjct: 1 gggtgcgg 8
>pxy-miR-8531 MIMAT0033774 Plutella xylostella miR-8531
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>ppc-miR-8286b-5p MIMAT0033240 Pristionchus pacificus
miR-8286b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 8 ggtgcgg 2
>ppc-miR-8286a-5p MIMAT0033077 Pristionchus pacificus
miR-8286a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 8 ggtgcgg 2
>ggo-miR-675b MIMAT0024305 Gorilla gorilla miR-675b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>ppy-miR-675a MIMAT0016098 Pongo pygmaeus miR-675a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>mmu-miR-3093-5p MIMAT0014907 Mus musculus miR-3093-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtgcg 7
|||||||
Sbjct: 7 gggtgcg 1
>rno-miR-675-5p MIMAT0012841 Rattus norvegicus miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>mml-miR-675-5p MIMAT0006507 Macaca mulatta miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>hsa-miR-675-5p MIMAT0004284 Homo sapiens miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>mmu-miR-675-5p MIMAT0003725 Mus musculus miR-675-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 2 ggtgcgg 8
>cel-miR-354-5p MIMAT0031894 Caenorhabditis elegans miR-354-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggtgcgg 8
|||||||
Sbjct: 1 ggtgcgg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 97
Number of extensions: 82
Number of successful extensions: 71
Number of sequences better than 100.0: 13
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
