BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-24
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-23b-5p MIMAT0032552 Salmo salar miR-23b-5p 16 6.9
ppe-miR8130-5p MIMAT0031556 Prunus persica miR8130-5p 16 6.9
cgr-miR-23b-5p MIMAT0023864 Cricetulus griseus miR-23b-5p 16 6.9
aca-miR-23b-5p MIMAT0021897 Anolis carolinensis miR-23b-5p 16 6.9
mml-miR-23b-5p MIMAT0026800 Macaca mulatta miR-23b-5p 16 6.9
mdo-miR-23b-5p MIMAT0026713 Monodelphis domestica miR-23b-5p 16 6.9
bta-miR-23b-5p MIMAT0012538 Bos taurus miR-23b-5p 16 6.9
gga-miR-23b-5p MIMAT0026546 Gallus gallus miR-23b-5p 16 6.9
rno-miR-23b-5p MIMAT0017099 Rattus norvegicus miR-23b-5p 16 6.9
mmu-miR-23b-5p MIMAT0016980 Mus musculus miR-23b-5p 16 6.9
oha-miR-23b-5p MIMAT0036856 Ophiophagus hannah miR-23b-5p 14 27
oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p 14 27
chi-miR-23b-5p MIMAT0036088 Capra hircus miR-23b-5p 14 27
ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p 14 27
ssa-miR-196b-3p MIMAT0032459 Salmo salar miR-196b-3p 14 27
cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p 14 27
aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p 14 27
hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914 14 27
tgu-miR-23-5p MIMAT0014644 Taeniopygia guttata miR-23-5p 14 27
gga-miR-1588 MIMAT0007450 Gallus gallus miR-1588 14 27
oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p 14 27
oan-miR-23b-5p MIMAT0006958 Ornithorhynchus anatinus miR-23b-5p 14 27
mdo-miR-23a-5p MIMAT0026710 Monodelphis domestica miR-23a-5p 14 27
mml-miR-23a-5p MIMAT0026599 Macaca mulatta miR-23a-5p 14 27
rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p 14 27
mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p 14 27
hsa-miR-23b-5p MIMAT0004587 Homo sapiens miR-23b-5p 14 27
hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p 14 27
>ssa-miR-23b-5p MIMAT0032552 Salmo salar miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>ppe-miR8130-5p MIMAT0031556 Prunus persica miR8130-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>cgr-miR-23b-5p MIMAT0023864 Cricetulus griseus miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>aca-miR-23b-5p MIMAT0021897 Anolis carolinensis miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>mml-miR-23b-5p MIMAT0026800 Macaca mulatta miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>mdo-miR-23b-5p MIMAT0026713 Monodelphis domestica miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>bta-miR-23b-5p MIMAT0012538 Bos taurus miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>gga-miR-23b-5p MIMAT0026546 Gallus gallus miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>rno-miR-23b-5p MIMAT0017099 Rattus norvegicus miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>mmu-miR-23b-5p MIMAT0016980 Mus musculus miR-23b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gggttcct 8
||||||||
Sbjct: 1 gggttcct 8
>oha-miR-23b-5p MIMAT0036856 Ophiophagus hannah miR-23b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>chi-miR-23b-5p MIMAT0036088 Capra hircus miR-23b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>ssa-miR-196b-3p MIMAT0032459 Salmo salar miR-196b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggttcct 8
|||||||
Sbjct: 8 ggttcct 2
>cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggttcct 8
|||||||
Sbjct: 8 ggttcct 2
>tgu-miR-23-5p MIMAT0014644 Taeniopygia guttata miR-23-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>gga-miR-1588 MIMAT0007450 Gallus gallus miR-1588
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggttcct 8
|||||||
Sbjct: 8 ggttcct 2
>oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>oan-miR-23b-5p MIMAT0006958 Ornithorhynchus anatinus miR-23b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>mdo-miR-23a-5p MIMAT0026710 Monodelphis domestica miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttcct 8
|||||||
Sbjct: 1 ggttcct 7
>mml-miR-23a-5p MIMAT0026599 Macaca mulatta miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttcct 8
|||||||
Sbjct: 1 ggttcct 7
>rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>hsa-miR-23b-5p MIMAT0004587 Homo sapiens miR-23b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
>hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttcc 7
|||||||
Sbjct: 2 gggttcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 197
Number of extensions: 159
Number of successful extensions: 142
Number of sequences better than 100.0: 28
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
