BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7320-5p MIMAT0028640 Monodelphis domestica miR-7320-5p 16 6.9
oha-miR-92a-5p MIMAT0036958 Ophiophagus hannah miR-92a-5p 14 27
chi-miR-92a-5p MIMAT0036302 Capra hircus miR-92a-5p 14 27
chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p 14 27
tae-miR9666b-3p MIMAT0035813 Triticum aestivum miR9666b-3p 14 27
efu-miR-92c MIMAT0034998 Eptesicus fuscus miR-92c 14 27
ssa-miR-92a-4-5p MIMAT0032710 Salmo salar miR-92a-4-5p 14 27
ssa-miR-92a-5p MIMAT0032707 Salmo salar miR-92a-5p 14 27
gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p 14 27
mmu-miR-7066-5p MIMAT0028036 Mus musculus miR-7066-5p 14 27
mmu-miR-6931-3p MIMAT0027763 Mus musculus miR-6931-3p 14 27
han-miR3440 MIMAT0025524 Helianthus annuus miR3440 14 27
ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296 14 27
ame-miR-92c MIMAT0023668 Apis mellifera miR-92c 14 27
ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p 14 27
hsa-miR-3147 MIMAT0015019 Homo sapiens miR-3147 14 27
tgu-miR-92-1-5p MIMAT0027007 Taeniopygia guttata miR-92-1-5p 14 27
oan-miR-92a-2-5p MIMAT0009170 Ornithorhynchus anatinus miR-92a-2-5p 14 27
mdo-miR-92a-1-5p MIMAT0026709 Monodelphis domestica miR-92a-1-5p 14 27
dre-miR-125b-2-3p MIMAT0031964 Danio rerio miR-125b-2-3p 14 27
dre-miR-92a-2-5p MIMAT0031954 Danio rerio miR-92a-2-5p 14 27
dre-miR-92a-5p MIMAT0031953 Danio rerio miR-92a-5p 14 27
gga-miR-92-5p MIMAT0026495 Gallus gallus miR-92-5p 14 27
rno-miR-92a-1-5p MIMAT0017107 Rattus norvegicus miR-92a-1-5p 14 27
mmu-miR-92a-1-5p MIMAT0017066 Mus musculus miR-92a-1-5p 14 27
hsa-miR-92a-1-5p MIMAT0004507 Homo sapiens miR-92a-1-5p 14 27
>mdo-miR-7320-5p MIMAT0028640 Monodelphis domestica miR-7320-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gggttggg 8
||||||||
Sbjct: 8 gggttggg 1
>oha-miR-92a-5p MIMAT0036958 Ophiophagus hannah miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>chi-miR-92a-5p MIMAT0036302 Capra hircus miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>tae-miR9666b-3p MIMAT0035813 Triticum aestivum miR9666b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>efu-miR-92c MIMAT0034998 Eptesicus fuscus miR-92c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>ssa-miR-92a-4-5p MIMAT0032710 Salmo salar miR-92a-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>ssa-miR-92a-5p MIMAT0032707 Salmo salar miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>mmu-miR-7066-5p MIMAT0028036 Mus musculus miR-7066-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>mmu-miR-6931-3p MIMAT0027763 Mus musculus miR-6931-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggttggg 8
|||||||
Sbjct: 7 ggttggg 1
>han-miR3440 MIMAT0025524 Helianthus annuus miR3440
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>ame-miR-92c MIMAT0023668 Apis mellifera miR-92c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>hsa-miR-3147 MIMAT0015019 Homo sapiens miR-3147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 1 ggttggg 7
>tgu-miR-92-1-5p MIMAT0027007 Taeniopygia guttata miR-92-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>oan-miR-92a-2-5p MIMAT0009170 Ornithorhynchus anatinus
miR-92a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>mdo-miR-92a-1-5p MIMAT0026709 Monodelphis domestica
miR-92a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>dre-miR-125b-2-3p MIMAT0031964 Danio rerio miR-125b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggttgg 7
|||||||
Sbjct: 2 gggttgg 8
>dre-miR-92a-2-5p MIMAT0031954 Danio rerio miR-92a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>dre-miR-92a-5p MIMAT0031953 Danio rerio miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>gga-miR-92-5p MIMAT0026495 Gallus gallus miR-92-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>rno-miR-92a-1-5p MIMAT0017107 Rattus norvegicus miR-92a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>mmu-miR-92a-1-5p MIMAT0017066 Mus musculus miR-92a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
>hsa-miR-92a-1-5p MIMAT0004507 Homo sapiens miR-92a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggttggg 8
|||||||
Sbjct: 2 ggttggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 152
Number of extensions: 125
Number of successful extensions: 89
Number of sequences better than 100.0: 26
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
