BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-3-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497 14 20
str-miR-8386-5p MIMAT0033432 Strongyloides ratti miR-8386-5p 14 20
hsa-miR-6771-3p MIMAT0027443 Homo sapiens miR-6771-3p 14 20
hco-miR-5904c MIMAT0023418 Haemonchus contortus miR-5904c 14 20
hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087 14 20
pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596 14 20
cte-miR-2696 MIMAT0013557 Capitella teleta miR-2696 14 20
chi-miR-497-3p MIMAT0036260 Capra hircus miR-497-3p 12 80
chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p 12 80
efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b 12 80
efu-miR-99a MIMAT0034944 Eptesicus fuscus miR-99a 12 80
eca-miR-9147 MIMAT0034723 Equus caballus miR-9147 12 80
pxy-miR-8524-5p MIMAT0033765 Plutella xylostella miR-8524-5p 12 80
pxy-miR-8507-5p MIMAT0033724 Plutella xylostella miR-8507-5p 12 80
ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p 12 80
stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b 12 80
prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p 12 80
bdi-miR166h-5p MIMAT0030087 Brachypodium distachyon miR166h-5p 12 80
mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p 12 80
mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p 12 80
mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p 12 80
mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p 12 80
mmu-miR-6997-3p MIMAT0027897 Mus musculus miR-6997-3p 12 80
hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p 12 80
hsa-miR-6715b-3p MIMAT0025843 Homo sapiens miR-6715b-3p 12 80
bta-miR-2285n MIMAT0025531 Bos taurus miR-2285n 12 80
bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o 12 80
mse-miR-2788 MIMAT0024492 Manduca sexta miR-2788 12 80
ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b 12 80
cgr-miR-497-3p MIMAT0023971 Cricetulus griseus miR-497-3p 12 80
cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p 12 80
hco-miR-5904b MIMAT0023373 Haemonchus contortus miR-5904b 12 80
hsa-miR-548as-3p MIMAT0022268 Homo sapiens miR-548as-3p 12 80
asu-miR-5363-3p MIMAT0021589 Ascaris suum miR-5363-3p 12 80
asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p 12 80
hme-miR-2788-5p MIMAT0020536 Heliconius melpomene miR-2788-5p 12 80
cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927 12 80
hsa-miR-4748 MIMAT0019884 Homo sapiens miR-4748 12 80
pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p 12 80
hsa-miR-4464 MIMAT0018988 Homo sapiens miR-4464 12 80
tca-miR-3885-3p MIMAT0018869 Tribolium castaneum miR-3885-3p 12 80
tca-miR-3883-3p MIMAT0018863 Tribolium castaneum miR-3883-3p 12 80
tca-miR-2788-5p MIMAT0018798 Tribolium castaneum miR-2788-5p 12 80
tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p 12 80
vvi-miR3636-5p MIMAT0018045 Vitis vinifera miR3636-5p 12 80
bmo-miR-3385-5p MIMAT0015581 Bombyx mori miR-3385-5p 12 80
api-miR-3038 MIMAT0014775 Acyrthosiphon pisum miR-3038 12 80
tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p 12 80
hvt-miR-H18-5p MIMAT0012874 Herpesvirus of miR-H18-5p 12 80
mdo-miR-497-3p MIMAT0026946 Monodelphis domestica miR-497-3p 12 80
bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p 12 80
bmo-miR-2788 MIMAT0013685 Bombyx mori miR-2788 12 80
mtr-miR2661 MIMAT0013468 Medicago truncatula miR2661 12 80
bta-miR-1603 MIMAT0011823 Bos taurus miR-1603 12 80
gma-miR2107 MIMAT0010083 Glycine max miR2107 12 80
cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b 12 80
mml-miR-616 MIMAT0006467 Macaca mulatta miR-616 12 80
mml-miR-497-3p MIMAT0026887 Macaca mulatta miR-497-3p 12 80
mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p 12 80
gga-miR-1555-5p MIMAT0026774 Gallus gallus miR-1555-5p 12 80
oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p 12 80
mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p 12 80
mmu-miR-497a-3p MIMAT0017247 Mus musculus miR-497a-3p 12 80
gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p 12 80
hsa-miR-497-3p MIMAT0004768 Homo sapiens miR-497-3p 12 80
hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p 12 80
zma-miR166j-5p MIMAT0015185 Zea mays miR166j-5p 12 80
osa-miR166k-5p MIMAT0022870 Oryza sativa miR166k-5p 12 80
>pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttg 7
|||||||
Sbjct: 1 gggtttg 7
>str-miR-8386-5p MIMAT0033432 Strongyloides ratti miR-8386-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttg 7
|||||||
Sbjct: 2 gggtttg 8
>hsa-miR-6771-3p MIMAT0027443 Homo sapiens miR-6771-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttg 7
|||||||
Sbjct: 7 gggtttg 1
>hco-miR-5904c MIMAT0023418 Haemonchus contortus miR-5904c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttg 7
|||||||
Sbjct: 7 gggtttg 1
>hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttg 7
|||||||
Sbjct: 1 gggtttg 7
>pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttg 7
|||||||
Sbjct: 1 gggtttg 7
>cte-miR-2696 MIMAT0013557 Capitella teleta miR-2696
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttg 7
|||||||
Sbjct: 2 gggtttg 8
>chi-miR-497-3p MIMAT0036260 Capra hircus miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 8 ggtttg 3
>chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>efu-miR-99a MIMAT0034944 Eptesicus fuscus miR-99a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>eca-miR-9147 MIMAT0034723 Equus caballus miR-9147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>pxy-miR-8524-5p MIMAT0033765 Plutella xylostella miR-8524-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>pxy-miR-8507-5p MIMAT0033724 Plutella xylostella miR-8507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>bdi-miR166h-5p MIMAT0030087 Brachypodium distachyon miR166h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 1 ggtttg 6
>mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 8 gggttt 3
>mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mmu-miR-6997-3p MIMAT0027897 Mus musculus miR-6997-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 7 ggtttg 2
>hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-6715b-3p MIMAT0025843 Homo sapiens miR-6715b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 8 ggtttg 3
>bta-miR-2285n MIMAT0025531 Bos taurus miR-2285n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 8 gggttt 3
>bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>mse-miR-2788 MIMAT0024492 Manduca sexta miR-2788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cgr-miR-497-3p MIMAT0023971 Cricetulus griseus miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hco-miR-5904b MIMAT0023373 Haemonchus contortus miR-5904b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 8 gggttt 3
>hsa-miR-548as-3p MIMAT0022268 Homo sapiens miR-548as-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 8 gggttt 3
>asu-miR-5363-3p MIMAT0021589 Ascaris suum miR-5363-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hme-miR-2788-5p MIMAT0020536 Heliconius melpomene miR-2788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-4748 MIMAT0019884 Homo sapiens miR-4748
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>hsa-miR-4464 MIMAT0018988 Homo sapiens miR-4464
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>tca-miR-3885-3p MIMAT0018869 Tribolium castaneum miR-3885-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>tca-miR-3883-3p MIMAT0018863 Tribolium castaneum miR-3883-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 8 ggtttg 3
>tca-miR-2788-5p MIMAT0018798 Tribolium castaneum miR-2788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>vvi-miR3636-5p MIMAT0018045 Vitis vinifera miR3636-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>bmo-miR-3385-5p MIMAT0015581 Bombyx mori miR-3385-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 8 ggtttg 3
>api-miR-3038 MIMAT0014775 Acyrthosiphon pisum miR-3038
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hvt-miR-H18-5p MIMAT0012874 Herpesvirus of miR-H18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 8 ggtttg 3
>mdo-miR-497-3p MIMAT0026946 Monodelphis domestica miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>bmo-miR-2788 MIMAT0013685 Bombyx mori miR-2788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mtr-miR2661 MIMAT0013468 Medicago truncatula miR2661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>bta-miR-1603 MIMAT0011823 Bos taurus miR-1603
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 3 ggtttg 8
>gma-miR2107 MIMAT0010083 Glycine max miR2107
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mml-miR-616 MIMAT0006467 Macaca mulatta miR-616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>mml-miR-497-3p MIMAT0026887 Macaca mulatta miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>gga-miR-1555-5p MIMAT0026774 Gallus gallus miR-1555-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 8 ggtttg 3
>oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mmu-miR-497a-3p MIMAT0017247 Mus musculus miR-497a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-497-3p MIMAT0004768 Homo sapiens miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttg 7
||||||
Sbjct: 6 ggtttg 1
>hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>zma-miR166j-5p MIMAT0015185 Zea mays miR166j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 1 ggtttg 6
>osa-miR166k-5p MIMAT0022870 Oryza sativa miR166k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttg 7
||||||
Sbjct: 1 ggtttg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 100
Number of extensions: 93
Number of successful extensions: 68
Number of sequences better than 100.0: 68
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
