BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-193b-5p MIMAT0035733 Rattus norvegicus miR-193b-5p 14 20
prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p 14 20
bta-miR-2285ad MIMAT0030446 Bos taurus miR-2285ad 14 20
bta-miR-2285y MIMAT0029944 Bos taurus miR-2285y 14 20
bta-miR-2285n MIMAT0025531 Bos taurus miR-2285n 14 20
bta-miR-2285l MIMAT0024587 Bos taurus miR-2285l 14 20
hsa-miR-548as-3p MIMAT0022268 Homo sapiens miR-548as-3p 14 20
tca-miR-3885-3p MIMAT0018869 Tribolium castaneum miR-3885-3p 14 20
cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p 14 20
oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p 12 80
chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p 12 80
tae-miR7757-5p MIMAT0035800 Triticum aestivum miR7757-5p 12 80
hsa-miR-548bb-3p MIMAT0035704 Homo sapiens miR-548bb-3p 12 80
efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b 12 80
efu-miR-99a MIMAT0034944 Eptesicus fuscus miR-99a 12 80
pxy-miR-8524-5p MIMAT0033765 Plutella xylostella miR-8524-5p 12 80
pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497 12 80
pxy-miR-8507-5p MIMAT0033724 Plutella xylostella miR-8507-5p 12 80
ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p 12 80
cpa-miR8150 MIMAT0031847 Carica papaya miR8150 12 80
stu-miR8030-3p MIMAT0031207 Solanum tuberosum miR8030-3p 12 80
stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b 12 80
bta-miR-2285ac MIMAT0030440 Bos taurus miR-2285ac 12 80
bta-miR-2285ab MIMAT0030436 Bos taurus miR-2285ab 12 80
bdi-miR7725b-3p.1 MIMAT0030183 Brachypodium distachyon miR7725b-... 12 80
bta-miR-2285u MIMAT0031094 Bos taurus miR-2285u 12 80
cbr-miR-7588 MIMAT0029592 Caenorhabditis briggsae miR-7588 12 80
mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p 12 80
mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p 12 80
mmu-miR-7065-3p MIMAT0028035 Mus musculus miR-7065-3p 12 80
mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p 12 80
hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p 12 80
bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o 12 80
bta-miR-2285k MIMAT0024586 Bos taurus miR-2285k 12 80
bta-miR-2285i MIMAT0024584 Bos taurus miR-2285i 12 80
bta-miR-2285f MIMAT0024581 Bos taurus miR-2285f 12 80
mse-miR-2788 MIMAT0024492 Manduca sexta miR-2788 12 80
ggo-miR-548b MIMAT0024260 Gorilla gorilla miR-548b 12 80
ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b 12 80
cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p 12 80
hco-miR-5904b MIMAT0023373 Haemonchus contortus miR-5904b 12 80
asu-miR-5351-5p MIMAT0021560 Ascaris suum miR-5351-5p 12 80
asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p 12 80
hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087 12 80
hme-miR-2788-5p MIMAT0020536 Heliconius melpomene miR-2788-5p 12 80
cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927 12 80
pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596 12 80
oar-miR-329a-5p MIMAT0019265 Ovis aries miR-329a-5p 12 80
oar-miR-329b-5p MIMAT0019263 Ovis aries miR-329b-5p 12 80
hsa-miR-548ac MIMAT0018938 Homo sapiens miR-548ac 12 80
hsa-miR-548z MIMAT0018446 Homo sapiens miR-548z 12 80
tca-miR-3894-5p MIMAT0018890 Tribolium castaneum miR-3894-5p 12 80
tca-miR-2788-5p MIMAT0018798 Tribolium castaneum miR-2788-5p 12 80
tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p 12 80
cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p 12 80
bmo-miR-3326 MIMAT0015513 Bombyx mori miR-3326 12 80
api-miR-3038 MIMAT0014775 Acyrthosiphon pisum miR-3038 12 80
tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p 12 80
cqu-bantam-5p MIMAT0014420 Culex quinquefasciatus bantam-5p 12 80
aae-bantam-5p MIMAT0014218 Aedes aegypti bantam-5p 12 80
osa-miR2868 MIMAT0013815 Oryza sativa miR2868 12 80
eca-miR-703 MIMAT0013002 Equus caballus miR-703 12 80
bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p 12 80
bmo-miR-2788 MIMAT0013685 Bombyx mori miR-2788 12 80
cte-miR-2721 MIMAT0013577 Capitella teleta miR-2721 12 80
bta-miR-1814a MIMAT0011874 Bos taurus miR-1814a 12 80
bta-miR-2312 MIMAT0011828 Bos taurus miR-2312 12 80
bta-miR-2301 MIMAT0011812 Bos taurus miR-2301 12 80
sme-miR-2160-2-3p MIMAT0013776 Schmidtea mediterranea miR-2160-2-3p 12 80
sme-miR-2156b-5p MIMAT0011393 Schmidtea mediterranea miR-2156b-5p 12 80
tca-bantam-5p MIMAT0019178 Tribolium castaneum bantam-5p 12 80
dvi-bantam-5p MIMAT0032086 Drosophila virilis bantam-5p 12 80
xla-miR-703 MIMAT0011148 Xenopus laevis miR-703 12 80
bmo-bantam-5p MIMAT0015278 Bombyx mori bantam-5p 12 80
osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p 12 80
osa-miR1857-5p MIMAT0007779 Oryza sativa miR1857-5p 12 80
cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b 12 80
mml-miR-616 MIMAT0006467 Macaca mulatta miR-616 12 80
mml-miR-548d-3p MIMAT0006414 Macaca mulatta miR-548d-3p 12 80
mml-miR-548b MIMAT0006411 Macaca mulatta miR-548b 12 80
mml-miR-329-2-5p MIMAT0031107 Macaca mulatta miR-329-2-5p 12 80
mml-miR-329-1-5p MIMAT0026852 Macaca mulatta miR-329-1-5p 12 80
mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p 12 80
gga-miR-1815 MIMAT0007512 Gallus gallus miR-1815 12 80
hsa-miR-1537-3p MIMAT0007399 Homo sapiens miR-1537-3p 12 80
oan-miR-1422d-3p MIMAT0007094 Ornithorhynchus anatinus miR-1422d-3p 12 80
oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus miR-1422k-3p 12 80
oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus miR-1422c-3p 12 80
oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus miR-1422e-3p 12 80
oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p 12 80
hsa-miR-548h-3p MIMAT0022723 Homo sapiens miR-548h-3p 12 80
mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p 12 80
sme-bantam-b-5p MIMAT0012085 Schmidtea mediterranea bantam-b-5p 12 80
mmu-miR-703 MIMAT0003493 Mus musculus miR-703 12 80
gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p 12 80
hsa-miR-548d-3p MIMAT0003323 Homo sapiens miR-548d-3p 12 80
hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p 12 80
hsa-miR-329-5p MIMAT0026555 Homo sapiens miR-329-5p 12 80
dme-bantam-5p MIMAT0020823 Drosophila melanogaster bantam-5p 12 80
>rno-miR-193b-5p MIMAT0035733 Rattus norvegicus miR-193b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttt 7
|||||||
Sbjct: 2 gggtttt 8
>prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttt 7
|||||||
Sbjct: 1 gggtttt 7
>bta-miR-2285ad MIMAT0030446 Bos taurus miR-2285ad
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttt 7
|||||||
Sbjct: 7 gggtttt 1
>bta-miR-2285y MIMAT0029944 Bos taurus miR-2285y
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttt 7
|||||||
Sbjct: 7 gggtttt 1
>bta-miR-2285n MIMAT0025531 Bos taurus miR-2285n
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttt 7
|||||||
Sbjct: 8 gggtttt 2
>bta-miR-2285l MIMAT0024587 Bos taurus miR-2285l
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttt 7
|||||||
Sbjct: 7 gggtttt 1
>hsa-miR-548as-3p MIMAT0022268 Homo sapiens miR-548as-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gggtttt 7
|||||||
Sbjct: 8 gggtttt 2
>tca-miR-3885-3p MIMAT0018869 Tribolium castaneum miR-3885-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttt 7
|||||||
Sbjct: 1 gggtttt 7
>cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggtttt 7
|||||||
Sbjct: 2 gggtttt 8
>oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>tae-miR7757-5p MIMAT0035800 Triticum aestivum miR7757-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>hsa-miR-548bb-3p MIMAT0035704 Homo sapiens miR-548bb-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>efu-miR-99a MIMAT0034944 Eptesicus fuscus miR-99a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>pxy-miR-8524-5p MIMAT0033765 Plutella xylostella miR-8524-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>pxy-miR-8507-5p MIMAT0033724 Plutella xylostella miR-8507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>cpa-miR8150 MIMAT0031847 Carica papaya miR8150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>stu-miR8030-3p MIMAT0031207 Solanum tuberosum miR8030-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>bta-miR-2285ac MIMAT0030440 Bos taurus miR-2285ac
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285ab MIMAT0030436 Bos taurus miR-2285ab
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bdi-miR7725b-3p.1 MIMAT0030183 Brachypodium distachyon
miR7725b-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>bta-miR-2285u MIMAT0031094 Bos taurus miR-2285u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>cbr-miR-7588 MIMAT0029592 Caenorhabditis briggsae miR-7588
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 8 gggttt 3
>mmu-miR-7065-3p MIMAT0028035 Mus musculus miR-7065-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>bta-miR-2285k MIMAT0024586 Bos taurus miR-2285k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285i MIMAT0024584 Bos taurus miR-2285i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285f MIMAT0024581 Bos taurus miR-2285f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>mse-miR-2788 MIMAT0024492 Manduca sexta miR-2788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>ggo-miR-548b MIMAT0024260 Gorilla gorilla miR-548b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hco-miR-5904b MIMAT0023373 Haemonchus contortus miR-5904b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 8 gggttt 3
>asu-miR-5351-5p MIMAT0021560 Ascaris suum miR-5351-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>hme-miR-2788-5p MIMAT0020536 Heliconius melpomene miR-2788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 1 gggttt 6
>oar-miR-329a-5p MIMAT0019265 Ovis aries miR-329a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>oar-miR-329b-5p MIMAT0019263 Ovis aries miR-329b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>hsa-miR-548ac MIMAT0018938 Homo sapiens miR-548ac
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>hsa-miR-548z MIMAT0018446 Homo sapiens miR-548z
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>tca-miR-3894-5p MIMAT0018890 Tribolium castaneum miR-3894-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 1 ggtttt 6
>tca-miR-2788-5p MIMAT0018798 Tribolium castaneum miR-2788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 1 ggtttt 6
>bmo-miR-3326 MIMAT0015513 Bombyx mori miR-3326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>api-miR-3038 MIMAT0014775 Acyrthosiphon pisum miR-3038
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cqu-bantam-5p MIMAT0014420 Culex quinquefasciatus bantam-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>aae-bantam-5p MIMAT0014218 Aedes aegypti bantam-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>osa-miR2868 MIMAT0013815 Oryza sativa miR2868
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>eca-miR-703 MIMAT0013002 Equus caballus miR-703
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>bmo-miR-2788 MIMAT0013685 Bombyx mori miR-2788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>cte-miR-2721 MIMAT0013577 Capitella teleta miR-2721
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>bta-miR-1814a MIMAT0011874 Bos taurus miR-1814a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 2 ggtttt 7
>bta-miR-2312 MIMAT0011828 Bos taurus miR-2312
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bta-miR-2301 MIMAT0011812 Bos taurus miR-2301
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>sme-miR-2160-2-3p MIMAT0013776 Schmidtea mediterranea
miR-2160-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 1 ggtttt 6
>sme-miR-2156b-5p MIMAT0011393 Schmidtea mediterranea
miR-2156b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>tca-bantam-5p MIMAT0019178 Tribolium castaneum bantam-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>dvi-bantam-5p MIMAT0032086 Drosophila virilis bantam-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>xla-miR-703 MIMAT0011148 Xenopus laevis miR-703
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>bmo-bantam-5p MIMAT0015278 Bombyx mori bantam-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>osa-miR1857-5p MIMAT0007779 Oryza sativa miR1857-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 2 ggtttt 7
>cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>mml-miR-616 MIMAT0006467 Macaca mulatta miR-616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggttt 6
||||||
Sbjct: 6 gggttt 1
>mml-miR-548d-3p MIMAT0006414 Macaca mulatta miR-548d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>mml-miR-548b MIMAT0006411 Macaca mulatta miR-548b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>mml-miR-329-2-5p MIMAT0031107 Macaca mulatta miR-329-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>mml-miR-329-1-5p MIMAT0026852 Macaca mulatta miR-329-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>gga-miR-1815 MIMAT0007512 Gallus gallus miR-1815
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>hsa-miR-1537-3p MIMAT0007399 Homo sapiens miR-1537-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>oan-miR-1422d-3p MIMAT0007094 Ornithorhynchus anatinus
miR-1422d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus
miR-1422k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus
miR-1422c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus
miR-1422e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-548h-3p MIMAT0022723 Homo sapiens miR-548h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>sme-bantam-b-5p MIMAT0012085 Schmidtea mediterranea bantam-b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>mmu-miR-703 MIMAT0003493 Mus musculus miR-703
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 6 ggtttt 1
>gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-548d-3p MIMAT0003323 Homo sapiens miR-548d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtttt 7
||||||
Sbjct: 8 ggtttt 3
>hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggttt 6
||||||
Sbjct: 3 gggttt 8
>hsa-miR-329-5p MIMAT0026555 Homo sapiens miR-329-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
>dme-bantam-5p MIMAT0020823 Drosophila melanogaster bantam-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtttt 7
||||||
Sbjct: 3 ggtttt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 156
Number of successful extensions: 99
Number of sequences better than 100.0: 99
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 99
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
