BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H4-5p MIMAT0008401 Herpes Simplex miR-H4-5p 16 6.9
ppy-miR-4451 MIMAT0024362 Pongo pygmaeus miR-4451 14 27
hco-miR-5966 MIMAT0023473 Haemonchus contortus miR-5966 14 27
hsa-miR-4451 MIMAT0018973 Homo sapiens miR-4451 14 27
mmu-miR-676-5p MIMAT0003781 Mus musculus miR-676-5p 14 27
>hsv1-miR-H4-5p MIMAT0008401 Herpes Simplex miR-H4-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ggtagagt 8
||||||||
Sbjct: 1 ggtagagt 8
>ppy-miR-4451 MIMAT0024362 Pongo pygmaeus miR-4451
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtagag 7
|||||||
Sbjct: 2 ggtagag 8
>hco-miR-5966 MIMAT0023473 Haemonchus contortus miR-5966
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtagag 7
|||||||
Sbjct: 8 ggtagag 2
>hsa-miR-4451 MIMAT0018973 Homo sapiens miR-4451
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtagag 7
|||||||
Sbjct: 2 ggtagag 8
>mmu-miR-676-5p MIMAT0003781 Mus musculus miR-676-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtagagt 8
|||||||
Sbjct: 7 gtagagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 121
Number of successful extensions: 92
Number of sequences better than 100.0: 5
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 5
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
