BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m107-1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oan-miR-7433-5p MIMAT0029016 Ornithorhynchus anatinus miR-7433-5p 14 20
sma-miR-190-3p MIMAT0025028 Schistosoma mansoni miR-190-3p 14 20
sja-miR-190-3p MIMAT0016266 Schistosoma japonicum miR-190-3p 14 20
mcmv-miR-m107-1-5p MIMAT0005555 Mouse cytomegalovirus miR-m107-1-5p 14 20
bra-miR161-3p MIMAT0035879 Brassica rapa miR161-3p 12 80
gsa-miR-2001-5p MIMAT0035280 Gyrodactylus salaris miR-2001-5p 12 80
efu-miR-9305 MIMAT0034978 Eptesicus fuscus miR-9305 12 80
gra-miR8690 MIMAT0034063 Gossypium raimondii miR8690 12 80
str-miR-360-5p MIMAT0033460 Strongyloides ratti miR-360-5p 12 80
ppc-miR-360-5p MIMAT0033129 Pristionchus pacificus miR-360-5p 12 80
ppc-miR-8256-5p MIMAT0032980 Pristionchus pacificus miR-8256-5p 12 80
ppc-miR-2238i-3p MIMAT0032941 Pristionchus pacificus miR-2238i-3p 12 80
ppc-miR-2238f-3p MIMAT0032857 Pristionchus pacificus miR-2238f-3p 12 80
prd-miR-360-5p MIMAT0030540 Panagrellus redivivus miR-360-5p 12 80
lva-miR-2001-5p MIMAT0032222 Lytechinus variegatus miR-2001-5p 12 80
pmi-miR-2011-5p MIMAT0032185 Patiria miniata miR-2011-5p 12 80
pmi-miR-2001-5p MIMAT0032175 Patiria miniata miR-2001-5p 12 80
cbn-miR-360 MIMAT0029943 Caenorhabditis brenneri miR-360 12 80
crm-miR-360 MIMAT0029923 Caenorhabditis remanei miR-360 12 80
oan-miR-7407-5p MIMAT0028960 Ornithorhynchus anatinus miR-7407-5p 12 80
mmu-miR-6917-3p MIMAT0027735 Mus musculus miR-6917-3p 12 80
hsa-miR-6808-3p MIMAT0027517 Homo sapiens miR-6808-3p 12 80
ssc-miR-2366 MIMAT0025388 Sus scrofa miR-2366 12 80
ssc-miR-489 MIMAT0025375 Sus scrofa miR-489 12 80
ggo-miR-668 MIMAT0024252 Gorilla gorilla miR-668 12 80
hco-miR-5914 MIMAT0023383 Haemonchus contortus miR-5914 12 80
mmu-miR-3073b-5p MIMAT0022375 Mus musculus miR-3073b-5p 12 80
hsa-miR-5587-5p MIMAT0022289 Homo sapiens miR-5587-5p 12 80
osa-miR5504 MIMAT0022137 Oryza sativa miR5504 12 80
aca-miR-34a-3p MIMAT0021940 Anolis carolinensis miR-34a-3p 12 80
hsa-miR-5190 MIMAT0021121 Homo sapiens miR-5190 12 80
pma-miR-4627 MIMAT0019661 Petromyzon marinus miR-4627 12 80
pma-miR-4554 MIMAT0019586 Petromyzon marinus miR-4554 12 80
oar-miR-668-3p MIMAT0019311 Ovis aries miR-668-3p 12 80
oar-miR-1193-3p MIMAT0019270 Ovis aries miR-1193-3p 12 80
oar-miR-370-5p MIMAT0019243 Ovis aries miR-370-5p 12 80
hsa-miR-4420 MIMAT0018933 Homo sapiens miR-4420 12 80
gma-miR4387d MIMAT0018301 Glycine max miR4387d 12 80
cin-miR-4001a-1-3p MIMAT0016445 Ciona intestinalis miR-4001a-1-3p 12 80
rno-miR-1193-3p MIMAT0017859 Rattus norvegicus miR-1193-3p 12 80
sja-miR-3485-5p MIMAT0016290 Schistosoma japonicum miR-3485-5p 12 80
aly-miR161-3p.2 MIMAT0017444 Arabidopsis lyrata miR161-3p.2 12 80
bmo-miR-3245 MIMAT0015427 Bombyx mori miR-3245 12 80
mmu-miR-3073a-5p MIMAT0014854 Mus musculus miR-3073a-5p 12 80
eca-miR-1193 MIMAT0013124 Equus caballus miR-1193 12 80
mtr-miR2658 MIMAT0013459 Medicago truncatula miR2658 12 80
bta-miR-2366 MIMAT0011904 Bos taurus miR-2366 12 80
sme-miR-2166 MIMAT0011263 Schmidtea mediterranea miR-2166 12 80
bta-miR-1193 MIMAT0009965 Bos taurus miR-1193 12 80
spu-miR-2001 MIMAT0009740 Strongylocentrotus purpuratus miR-2001 12 80
sko-miR-2001 MIMAT0009735 Saccoglossus kowalevskii miR-2001 12 80
lgi-miR-2001 MIMAT0009731 Lottia gigantea miR-2001 12 80
isc-miR-2001 MIMAT0009721 Ixodes scapularis miR-2001 12 80
cte-miR-2001 MIMAT0009705 Capitella teleta miR-2001 12 80
mml-miR-370-5p MIMAT0026857 Macaca mulatta miR-370-5p 12 80
gga-miR-449b-3p MIMAT0007744 Gallus gallus miR-449b-3p 12 80
gga-miR-1640 MIMAT0007515 Gallus gallus miR-1640 12 80
gga-miR-1627-5p MIMAT0007497 Gallus gallus miR-1627-5p 12 80
oan-miR-1421ak-5p MIMAT0007309 Ornithorhynchus anatinus miR-1421... 12 80
oan-miR-1421x-5p MIMAT0007242 Ornithorhynchus anatinus miR-1421x-5p 12 80
hsa-miR-1236-5p MIMAT0022945 Homo sapiens miR-1236-5p 12 80
mmu-miR-1193-3p MIMAT0005851 Mus musculus miR-1193-3p 12 80
mcmv-miR-m108-2-5p.1 MIMAT0005560 Mouse cytomegalovirus miR-m108... 12 80
mtr-miR398a-5p MIMAT0022935 Medicago truncatula miR398a-5p 12 80
mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p 12 80
xtr-miR-489 MIMAT0003642 Xenopus tropicalis miR-489 12 80
gga-miR-489-3p MIMAT0003365 Gallus gallus miR-489-3p 12 80
rno-miR-370-5p MIMAT0017202 Rattus norvegicus miR-370-5p 12 80
dre-miR-489 MIMAT0002940 Danio rerio miR-489 12 80
tni-miR-489 MIMAT0002939 Tetraodon nigroviridis miR-489 12 80
fru-miR-489 MIMAT0002938 Fugu rubripes miR-489 12 80
kshv-miR-K12-11-5p MIMAT0015213 Kaposi sarcoma-associated miR-K1... 12 80
mmu-miR-370-5p MIMAT0017174 Mus musculus miR-370-5p 12 80
hsa-miR-370-5p MIMAT0026483 Homo sapiens miR-370-5p 12 80
cel-miR-360-5p MIMAT0015121 Caenorhabditis elegans miR-360-5p 12 80
>oan-miR-7433-5p MIMAT0029016 Ornithorhynchus anatinus
miR-7433-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtcact 7
|||||||
Sbjct: 2 ggtcact 8
>sma-miR-190-3p MIMAT0025028 Schistosoma mansoni miR-190-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtcact 7
|||||||
Sbjct: 8 ggtcact 2
>sja-miR-190-3p MIMAT0016266 Schistosoma japonicum miR-190-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtcact 7
|||||||
Sbjct: 8 ggtcact 2
>mcmv-miR-m107-1-5p MIMAT0005555 Mouse cytomegalovirus
miR-m107-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtcact 7
|||||||
Sbjct: 2 ggtcact 8
>bra-miR161-3p MIMAT0035879 Brassica rapa miR161-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcact 7
||||||
Sbjct: 1 gtcact 6
>gsa-miR-2001-5p MIMAT0035280 Gyrodactylus salaris miR-2001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>efu-miR-9305 MIMAT0034978 Eptesicus fuscus miR-9305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtcac 6
||||||
Sbjct: 3 ggtcac 8
>gra-miR8690 MIMAT0034063 Gossypium raimondii miR8690
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcact 7
||||||
Sbjct: 8 gtcact 3
>str-miR-360-5p MIMAT0033460 Strongyloides ratti miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>ppc-miR-360-5p MIMAT0033129 Pristionchus pacificus miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>ppc-miR-8256-5p MIMAT0032980 Pristionchus pacificus miR-8256-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcact 7
||||||
Sbjct: 8 gtcact 3
>ppc-miR-2238i-3p MIMAT0032941 Pristionchus pacificus
miR-2238i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcact 7
||||||
Sbjct: 6 gtcact 1
>ppc-miR-2238f-3p MIMAT0032857 Pristionchus pacificus
miR-2238f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcact 7
||||||
Sbjct: 6 gtcact 1
>prd-miR-360-5p MIMAT0030540 Panagrellus redivivus miR-360-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>lva-miR-2001-5p MIMAT0032222 Lytechinus variegatus miR-2001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>pmi-miR-2011-5p MIMAT0032185 Patiria miniata miR-2011-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcact 7
||||||
Sbjct: 3 gtcact 8
>pmi-miR-2001-5p MIMAT0032175 Patiria miniata miR-2001-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>cbn-miR-360 MIMAT0029943 Caenorhabditis brenneri miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>crm-miR-360 MIMAT0029923 Caenorhabditis remanei miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtcac 6
||||||
Sbjct: 8 ggtcac 3
>oan-miR-7407-5p MIMAT0028960 Ornithorhynchus anatinus
miR-7407-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcact 7
||||||
Sbjct: 7 gtcact 2
>mmu-miR-6917-3p MIMAT0027735 Mus musculus miR-6917-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcact 7
||||||
Sbjct: 1 gtcact 6
>hsa-miR-6808-3p MIMAT0027517 Homo sapiens miR-6808-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
