BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s28
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8995 MIMAT0034534 Equus caballus miR-8995 14 20
gga-miR-6685-3p MIMAT0025791 Gallus gallus miR-6685-3p 14 20
cfa-miR-8878 MIMAT0034378 Canis familiaris miR-8878 12 80
lja-miR7546 MIMAT0029373 Lotus japonicus miR7546 12 80
ghr-miR7498 MIMAT0029145 Gossypium hirsutum miR7498 12 80
mdo-miR-7323-3p MIMAT0028647 Monodelphis domestica miR-7323-3p 12 80
ame-miR-6043 MIMAT0023665 Apis mellifera miR-6043 12 80
hco-miR-5922 MIMAT0023398 Haemonchus contortus miR-5922 12 80
gma-miR5679 MIMAT0022467 Glycine max miR5679 12 80
sja-miR-3502 MIMAT0016311 Schistosoma japonicum miR-3502 12 80
gga-miR-1689-3p MIMAT0007580 Gallus gallus miR-1689-3p 12 80
oan-miR-1421h-5p MIMAT0006977 Ornithorhynchus anatinus miR-1421h-5p 12 80
hcmv-miR-UL112-3p MIMAT0001577 Human cytomegalovirus miR-UL112-3p 12 80
>eca-miR-8995 MIMAT0034534 Equus caballus miR-8995
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgacg 7
|||||||
Sbjct: 1 ggtgacg 7
>gga-miR-6685-3p MIMAT0025791 Gallus gallus miR-6685-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgacg 7
|||||||
Sbjct: 2 ggtgacg 8
>cfa-miR-8878 MIMAT0034378 Canis familiaris miR-8878
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgacg 7
||||||
Sbjct: 3 gtgacg 8
>lja-miR7546 MIMAT0029373 Lotus japonicus miR7546
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgac 6
||||||
Sbjct: 3 ggtgac 8
>ghr-miR7498 MIMAT0029145 Gossypium hirsutum miR7498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgac 6
||||||
Sbjct: 3 ggtgac 8
>mdo-miR-7323-3p MIMAT0028647 Monodelphis domestica miR-7323-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgac 6
||||||
Sbjct: 8 ggtgac 3
>ame-miR-6043 MIMAT0023665 Apis mellifera miR-6043
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgac 6
||||||
Sbjct: 3 ggtgac 8
>hco-miR-5922 MIMAT0023398 Haemonchus contortus miR-5922
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgac 6
||||||
Sbjct: 3 ggtgac 8
>gma-miR5679 MIMAT0022467 Glycine max miR5679
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgac 6
||||||
Sbjct: 3 ggtgac 8
>sja-miR-3502 MIMAT0016311 Schistosoma japonicum miR-3502
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgacg 7
||||||
Sbjct: 1 gtgacg 6
>gga-miR-1689-3p MIMAT0007580 Gallus gallus miR-1689-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgac 6
||||||
Sbjct: 3 ggtgac 8
>oan-miR-1421h-5p MIMAT0006977 Ornithorhynchus anatinus
miR-1421h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgac 6
||||||
Sbjct: 8 ggtgac 3
>hcmv-miR-UL112-3p MIMAT0001577 Human cytomegalovirus
miR-UL112-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgacg 7
||||||
Sbjct: 3 gtgacg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 24
Number of extensions: 22
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
