BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s47
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-1229-3p MIMAT0005584 Homo sapiens miR-1229-3p 16 6.9
ssc-miR-9827-5p MIMAT0037045 Sus scrofa miR-9827-5p 14 27
oan-miR-7427-5p MIMAT0029004 Ornithorhynchus anatinus miR-7427-5p 14 27
mmu-miR-6944-5p MIMAT0027788 Mus musculus miR-6944-5p 14 27
hsa-miR-6784-3p MIMAT0027469 Homo sapiens miR-6784-3p 14 27
prv-miR-LLT1 MIMAT0025304 Pseudorabies virus miR-LLT1 14 27
ppe-miR482a-5p MIMAT0031165 Prunus persica miR482a-5p 14 27
cel-miR-356b-5p MIMAT0022311 Caenorhabditis elegans miR-356b-5p 14 27
nve-miR-2036-5p MIMAT0009794 Nematostella vectensis miR-2036-5p 14 27
mmu-miR-1982-3p MIMAT0009460 Mus musculus miR-1982-3p 14 27
>hsa-miR-1229-3p MIMAT0005584 Homo sapiens miR-1229-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtgagag 8
||||||||
Sbjct: 8 ggtgagag 1
>ssc-miR-9827-5p MIMAT0037045 Sus scrofa miR-9827-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgaga 7
|||||||
Sbjct: 1 ggtgaga 7
>oan-miR-7427-5p MIMAT0029004 Ornithorhynchus anatinus
miR-7427-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgaga 7
|||||||
Sbjct: 2 ggtgaga 8
>mmu-miR-6944-5p MIMAT0027788 Mus musculus miR-6944-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgagag 8
|||||||
Sbjct: 1 gtgagag 7
>hsa-miR-6784-3p MIMAT0027469 Homo sapiens miR-6784-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgaga 7
|||||||
Sbjct: 7 ggtgaga 1
>prv-miR-LLT1 MIMAT0025304 Pseudorabies virus miR-LLT1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgaga 7
|||||||
Sbjct: 7 ggtgaga 1
>ppe-miR482a-5p MIMAT0031165 Prunus persica miR482a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgaga 7
|||||||
Sbjct: 2 ggtgaga 8
>cel-miR-356b-5p MIMAT0022311 Caenorhabditis elegans miR-356b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgaga 7
|||||||
Sbjct: 2 ggtgaga 8
>nve-miR-2036-5p MIMAT0009794 Nematostella vectensis miR-2036-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgaga 7
|||||||
Sbjct: 2 ggtgaga 8
>mmu-miR-1982-3p MIMAT0009460 Mus musculus miR-1982-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgaga 7
|||||||
Sbjct: 7 ggtgaga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 151
Number of extensions: 140
Number of successful extensions: 113
Number of sequences better than 100.0: 10
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
