BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kun-miR-1
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3         14      20
ppc-miR-8286b-5p MIMAT0033240 Pristionchus pacificus miR-8286b-5p      12      80
ppc-miR-8286a-5p MIMAT0033077 Pristionchus pacificus miR-8286a-5p      12      80
prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p         12      80
hsa-miR-6804-3p MIMAT0027509 Homo sapiens miR-6804-3p                  12      80
osa-miR5540 MIMAT0022176 Oryza sativa miR5540                          12      80
bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p         12      80
tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p           12      80
ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734                      12      80
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p            12      80
mmu-miR-3093-5p MIMAT0014907 Mus musculus miR-3093-5p                  12      80
hsv1-miR-H14-5p MIMAT0014691 Herpes Simplex miR-H14-5p                 12      80
tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p           12      80
hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p                   12      80
gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p                 12      80
ppt-miR1038-5p MIMAT0005146 Physcomitrella patens miR1038-5p           12      80
rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus miR-rL1...    12      80
rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus miR-rL1-...    12      80
ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p                12      80
zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p                        12      80
osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p                    12      80
cel-miR-354-5p MIMAT0031894 Caenorhabditis elegans miR-354-5p          12      80
osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p                    12      80
>rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtgcga 7
         |||||||
Sbjct: 7 ggtgcga 1
>ppc-miR-8286b-5p MIMAT0033240 Pristionchus pacificus
         miR-8286b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 8 ggtgcg 3
>ppc-miR-8286a-5p MIMAT0033077 Pristionchus pacificus
         miR-8286a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 8 ggtgcg 3
>prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 8 gtgcga 3
>hsa-miR-6804-3p MIMAT0027509 Homo sapiens miR-6804-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>osa-miR5540 MIMAT0022176 Oryza sativa miR5540
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 3 gtgcga 8
>bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 3 gtgcga 8
>tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 8 gtgcga 3
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>mmu-miR-3093-5p MIMAT0014907 Mus musculus miR-3093-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>hsv1-miR-H14-5p MIMAT0014691 Herpes Simplex miR-H14-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 8 gtgcga 3
>tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>ppt-miR1038-5p MIMAT0005146 Physcomitrella patens miR1038-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 3 ggtgcg 8
>rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus
         miR-rL1-14-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus
         miR-rL1-5-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 3 gtgcga 8
>osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 3 gtgcga 8
>cel-miR-354-5p MIMAT0031894 Caenorhabditis elegans miR-354-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 1 ggtgcg 6
>osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 3 gtgcga 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 36
Number of extensions: 35
Number of successful extensions: 23
Number of sequences better than 100.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)