BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9825-5p MIMAT0037043 Sus scrofa miR-9825-5p 14 27
chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p 14 27
chi-miR-376e-5p MIMAT0036190 Capra hircus miR-376e-5p 14 27
chi-miR-376c-5p MIMAT0036187 Capra hircus miR-376c-5p 14 27
chi-miR-376b-5p MIMAT0036185 Capra hircus miR-376b-5p 14 27
efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322 14 27
ppc-miR-36-5p MIMAT0032882 Pristionchus pacificus miR-36-5p 14 27
prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p 14 27
prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p 14 27
bdi-miR159b-3p.2 MIMAT0030085 Brachypodium distachyon miR159b-3p.2 14 27
mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p 14 27
hvu-miR6188 MIMAT0024812 Hordeum vulgare miR6188 14 27
ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165 14 27
asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p 14 27
oar-miR-376b-5p MIMAT0019284 Ovis aries miR-376b-5p 14 27
oar-miR-376e-5p MIMAT0019277 Ovis aries miR-376e-5p 14 27
hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p 14 27
sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p 14 27
aly-miR3437-3p MIMAT0017706 Arabidopsis lyrata miR3437-3p 14 27
hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165 14 27
dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura miR-2548-5p 14 27
bta-miR-502b MIMAT0009339 Bos taurus miR-502b 14 27
cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii miR1169-3p 14 27
hsa-miR-376c-5p MIMAT0022861 Homo sapiens miR-376c-5p 14 27
cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p 14 27
cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p 14 27
>ssc-miR-9825-5p MIMAT0037043 Sus scrofa miR-9825-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 2 ggtggat 8
>chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggat 7
|||||||
Sbjct: 7 ggtggat 1
>chi-miR-376e-5p MIMAT0036190 Capra hircus miR-376e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>chi-miR-376c-5p MIMAT0036187 Capra hircus miR-376c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>chi-miR-376b-5p MIMAT0036185 Capra hircus miR-376b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>ppc-miR-36-5p MIMAT0032882 Pristionchus pacificus miR-36-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 1 gtggatg 7
>prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>bdi-miR159b-3p.2 MIMAT0030085 Brachypodium distachyon
miR159b-3p.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggat 7
|||||||
Sbjct: 7 ggtggat 1
>mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>hvu-miR6188 MIMAT0024812 Hordeum vulgare miR6188
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 2 ggtggat 8
>asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>oar-miR-376b-5p MIMAT0019284 Ovis aries miR-376b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>oar-miR-376e-5p MIMAT0019277 Ovis aries miR-376e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 2 ggtggat 8
>aly-miR3437-3p MIMAT0017706 Arabidopsis lyrata miR3437-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 2 ggtggat 8
>hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 2 ggtggat 8
>dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura
miR-2548-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 2 ggtggat 8
>bta-miR-502b MIMAT0009339 Bos taurus miR-502b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggat 7
|||||||
Sbjct: 8 ggtggat 2
>cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii
miR1169-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
>hsa-miR-376c-5p MIMAT0022861 Homo sapiens miR-376c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggat 7
|||||||
Sbjct: 1 ggtggat 7
>cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtggatg 8
|||||||
Sbjct: 8 gtggatg 2
>cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggatg 8
|||||||
Sbjct: 2 gtggatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 190
Number of extensions: 164
Number of successful extensions: 130
Number of sequences better than 100.0: 26
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
