BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-8-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus miR-rL1-... 16 6.9
ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p 14 27
sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p 14 27
mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p 14 27
mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica miR-7386k-5p 14 27
ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654 14 27
bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166 14 27
oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p 14 27
hsa-miR-4417 MIMAT0018929 Homo sapiens miR-4417 14 27
gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p 14 27
rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p 14 27
ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p 14 27
ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541 14 27
eca-miR-541 MIMAT0013168 Equus caballus miR-541 14 27
mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p 14 27
bta-miR-541 MIMAT0009343 Bos taurus miR-541 14 27
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2 14 27
mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p 14 27
rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p 14 27
hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p 14 27
mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p 14 27
mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p 14 27
rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus miR-rL1-... 14 27
ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p 14 27
hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p 14 27
zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p 14 27
zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p 14 27
ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p 14 27
>rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus
miR-rL1-8-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ggtgggcc 8
||||||||
Sbjct: 1 ggtgggcc 8
>ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggcc 8
|||||||
Sbjct: 8 gtgggcc 2
>mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica
miR-7386k-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 2 gtgggcc 8
>ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggc 7
|||||||
Sbjct: 8 ggtgggc 2
>oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>hsa-miR-4417 MIMAT0018929 Homo sapiens miR-4417
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 1 ggtgggc 7
>gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggc 7
|||||||
Sbjct: 8 ggtgggc 2
>ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>eca-miR-541 MIMAT0013168 Equus caballus miR-541
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>bta-miR-541 MIMAT0009343 Bos taurus miR-541
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggcc 8
|||||||
Sbjct: 8 gtgggcc 2
>mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 1 gtgggcc 7
>hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggc 7
|||||||
Sbjct: 8 ggtgggc 2
>mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 2 gtgggcc 8
>rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus
miR-rL1-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 2 gtgggcc 8
>ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 1 gtgggcc 7
>hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 209
Number of extensions: 180
Number of successful extensions: 148
Number of sequences better than 100.0: 28
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
