BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b19-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p 14 27
sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p 14 27
hbv-miR-B19-5p MIMAT0031769 Herpes B miR-B19-5p 14 27
mmu-miR-7658-5p MIMAT0029822 Mus musculus miR-7658-5p 14 27
ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654 14 27
ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228 14 27
tca-miR-6009-3p MIMAT0023560 Tribolium castaneum miR-6009-3p 14 27
asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p 14 27
bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166 14 27
oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p 14 27
hsa-miR-4417 MIMAT0018929 Homo sapiens miR-4417 14 27
gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p 14 27
rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p 14 27
ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p 14 27
ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541 14 27
eca-miR-541 MIMAT0013168 Equus caballus miR-541 14 27
mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p 14 27
bta-miR-541 MIMAT0009343 Bos taurus miR-541 14 27
mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p 14 27
gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777 14 27
hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p 14 27
hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p 14 27
mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p 14 27
rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus miR-rL1-... 14 27
hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p 14 27
zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p 14 27
zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p 14 27
ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p 14 27
>ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>hbv-miR-B19-5p MIMAT0031769 Herpes B miR-B19-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcg 8
|||||||
Sbjct: 1 gtgggcg 7
>mmu-miR-7658-5p MIMAT0029822 Mus musculus miR-7658-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcg 8
|||||||
Sbjct: 2 gtgggcg 8
>ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcg 8
|||||||
Sbjct: 1 gtgggcg 7
>tca-miR-6009-3p MIMAT0023560 Tribolium castaneum miR-6009-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcg 8
|||||||
Sbjct: 1 gtgggcg 7
>asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggcg 8
|||||||
Sbjct: 8 gtgggcg 2
>bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggc 7
|||||||
Sbjct: 8 ggtgggc 2
>oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>hsa-miR-4417 MIMAT0018929 Homo sapiens miR-4417
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 1 ggtgggc 7
>gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggc 7
|||||||
Sbjct: 8 ggtgggc 2
>ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>eca-miR-541 MIMAT0013168 Equus caballus miR-541
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>bta-miR-541 MIMAT0009343 Bos taurus miR-541
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcg 8
|||||||
Sbjct: 1 gtgggcg 7
>hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcg 8
|||||||
Sbjct: 1 gtgggcg 7
>hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggc 7
|||||||
Sbjct: 8 ggtgggc 2
>rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus
miR-rL1-8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 1 ggtgggc 7
>hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
>ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggc 7
|||||||
Sbjct: 2 ggtgggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 186
Number of extensions: 158
Number of successful extensions: 128
Number of sequences better than 100.0: 28
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
