BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9272 MIMAT0034905 Eptesicus fuscus miR-9272 14 20
bbe-miR-2058-3p MIMAT0031616 Branchiostoma belcheri miR-2058-3p 14 20
mdo-miR-92a-2-5p MIMAT0031050 Monodelphis domestica miR-92a-2-5p 14 20
ggo-miR-3151 MIMAT0024259 Gorilla gorilla miR-3151 14 20
ptr-miR-3151 MIMAT0024031 Pan troglodytes miR-3151 14 20
hsa-miR-4472 MIMAT0018999 Homo sapiens miR-4472 14 20
hsa-miR-4447 MIMAT0018966 Homo sapiens miR-4447 14 20
ppy-miR-1224-3p MIMAT0016159 Pongo pygmaeus miR-1224-3p 14 20
hsa-miR-3151-5p MIMAT0015024 Homo sapiens miR-3151-5p 14 20
bta-miR-2888 MIMAT0013846 Bos taurus miR-2888 14 20
bfl-miR-2058-3p MIMAT0019167 Branchiostoma floridae miR-2058-3p 14 20
mml-miR-92a-5p MIMAT0026809 Macaca mulatta miR-92a-5p 14 20
gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594 14 20
oan-miR-92a-1-5p MIMAT0006857 Ornithorhynchus anatinus miR-92a-1-5p 14 20
mml-miR-1224-3p MIMAT0005571 Macaca mulatta miR-1224-3p 14 20
ptr-miR-1224-3p MIMAT0005569 Pan troglodytes miR-1224-3p 14 20
mmu-miR-1224-3p MIMAT0017231 Mus musculus miR-1224-3p 14 20
hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p 14 20
rno-miR-92a-2-5p MIMAT0017108 Rattus norvegicus miR-92a-2-5p 14 20
mmu-miR-92a-2-5p MIMAT0004635 Mus musculus miR-92a-2-5p 14 20
hsa-miR-92a-2-5p MIMAT0004508 Homo sapiens miR-92a-2-5p 14 20
pxy-miR-8498 MIMAT0033708 Plutella xylostella miR-8498 12 80
bbe-miR-705-5p MIMAT0031716 Branchiostoma belcheri miR-705-5p 12 80
bbe-miR-278-5p MIMAT0031659 Branchiostoma belcheri miR-278-5p 12 80
ppe-miR8128-3p MIMAT0031551 Prunus persica miR8128-3p 12 80
prd-miR-7961-3p MIMAT0030821 Panagrellus redivivus miR-7961-3p 12 80
ptc-miR7836 MIMAT0030408 Populus trichocarpa miR7836 12 80
ptc-miR7837 MIMAT0030393 Populus trichocarpa miR7837 12 80
lva-miR-278-3p MIMAT0032219 Lytechinus variegatus miR-278-3p 12 80
pmi-miR-278-3p MIMAT0032172 Patiria miniata miR-278-3p 12 80
oan-miR-7417-5p MIMAT0028982 Ornithorhynchus anatinus miR-7417-5p 12 80
mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p 12 80
mmu-miR-7085-5p MIMAT0028076 Mus musculus miR-7085-5p 12 80
mmu-miR-7000-3p MIMAT0027903 Mus musculus miR-7000-3p 12 80
mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p 12 80
mmu-miR-6963-5p MIMAT0027826 Mus musculus miR-6963-5p 12 80
mmu-miR-6952-5p MIMAT0027804 Mus musculus miR-6952-5p 12 80
hsa-miR-6796-5p MIMAT0027492 Homo sapiens miR-6796-5p 12 80
hsa-miR-6786-5p MIMAT0027472 Homo sapiens miR-6786-5p 12 80
hsa-miR-6766-5p MIMAT0027432 Homo sapiens miR-6766-5p 12 80
hsa-miR-6756-5p MIMAT0027412 Homo sapiens miR-6756-5p 12 80
prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8 12 80
hme-miR-278 MIMAT0024960 Heliconius melpomene miR-278 12 80
bta-miR-1260b MIMAT0024568 Bos taurus miR-1260b 12 80
mse-miR-278 MIMAT0024451 Manduca sexta miR-278 12 80
ppy-miR-1260b MIMAT0024370 Pongo pygmaeus miR-1260b 12 80
mml-miR-1296-3p MIMAT0027114 Macaca mulatta miR-1296-3p 12 80
mml-miR-1260b MIMAT0024319 Macaca mulatta miR-1260b 12 80
ggo-miR-1260b MIMAT0024240 Gorilla gorilla miR-1260b 12 80
ptr-miR-1260b MIMAT0024066 Pan troglodytes miR-1260b 12 80
cgr-miR-181d-3p MIMAT0023804 Cricetulus griseus miR-181d-3p 12 80
cgr-miR-1260 MIMAT0023746 Cricetulus griseus miR-1260 12 80
tur-miR-278-3p MIMAT0023031 Tetranychus urticae miR-278-3p 12 80
cin-miR-5596b-3p MIMAT0022328 Ciona intestinalis miR-5596b-3p 12 80
aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453 12 80
bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054 12 80
bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166 12 80
mmu-miR-5132-5p MIMAT0020643 Mus musculus miR-5132-5p 12 80
mmu-miR-5129-5p MIMAT0020640 Mus musculus miR-5129-5p 12 80
hsa-miR-4769-5p MIMAT0019922 Homo sapiens miR-4769-5p 12 80
hsa-miR-4758-3p MIMAT0019904 Homo sapiens miR-4758-3p 12 80
pma-miR-4589 MIMAT0019622 Petromyzon marinus miR-4589 12 80
mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971 12 80
hsa-miR-4417 MIMAT0018929 Homo sapiens miR-4417 12 80
isc-miR-278 MIMAT0016930 Ixodes scapularis miR-278 12 80
ssc-miR-1296-3p MIMAT0017976 Sus scrofa miR-1296-3p 12 80
rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p 12 80
ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275 12 80
ppy-miR-1260a MIMAT0016184 Pongo pygmaeus miR-1260a 12 80
hsa-miR-1260b MIMAT0015041 Homo sapiens miR-1260b 12 80
api-miR-278 MIMAT0014723 Acyrthosiphon pisum miR-278 12 80
tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p 12 80
cqu-miR-278 MIMAT0014377 Culex quinquefasciatus miR-278 12 80
hsv2-miR-H9-3p MIMAT0014352 Herpes Simplex miR-H9-3p 12 80
aae-miR-278-3p MIMAT0014238 Aedes aegypti miR-278-3p 12 80
ssc-miR-181d-3p MIMAT0017375 Sus scrofa miR-181d-3p 12 80
bta-miR-2897 MIMAT0013855 Bos taurus miR-2897 12 80
dpu-miR-278 MIMAT0012653 Daphnia pulex miR-278 12 80
bfl-miR-278 MIMAT0010135 Branchiostoma floridae miR-278 12 80
bfl-miR-705 MIMAT0010013 Branchiostoma floridae miR-705 12 80
spu-miR-278-3p MIMAT0009674 Strongylocentrotus purpuratus miR-27... 12 80
sko-miR-278 MIMAT0009640 Saccoglossus kowalevskii miR-278 12 80
lgi-miR-278 MIMAT0009592 Lottia gigantea miR-278 12 80
cte-miR-278 MIMAT0009538 Capitella teleta miR-278 12 80
bmo-miR-278-3p MIMAT0009164 Bombyx mori miR-278-3p 12 80
dya-miR-278 MIMAT0009086 Drosophila yakuba miR-278 12 80
dwi-miR-278 MIMAT0009029 Drosophila willistoni miR-278 12 80
dvi-miR-278-3p MIMAT0008937 Drosophila virilis miR-278-3p 12 80
dsi-miR-278 MIMAT0008891 Drosophila simulans miR-278 12 80
dse-miR-278 MIMAT0008781 Drosophila sechellia miR-278 12 80
dpe-miR-278 MIMAT0008726 Drosophila persimilis miR-278 12 80
dmo-miR-278 MIMAT0008676 Drosophila mojavensis miR-278 12 80
dgr-miR-278 MIMAT0008597 Drosophila grimshawi miR-278 12 80
der-miR-278 MIMAT0008530 Drosophila erecta miR-278 12 80
dan-miR-278 MIMAT0008470 Drosophila ananassae miR-278 12 80
ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275 12 80
mml-miR-194-3p MIMAT0026837 Macaca mulatta miR-194-3p 12 80
oan-miR-1391-3p MIMAT0007186 Ornithorhynchus anatinus miR-1391-3p 12 80
hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 12 80
hsa-miR-1260a MIMAT0005911 Homo sapiens miR-1260a 12 80
mml-miR-1227 MIMAT0005581 Macaca mulatta miR-1227 12 80
hsa-miR-1227-5p MIMAT0022941 Homo sapiens miR-1227-5p 12 80
mmu-miR-181d-3p MIMAT0017264 Mus musculus miR-181d-3p 12 80
sme-miR-278-3p MIMAT0004011 Schmidtea mediterranea miR-278-3p 12 80
mmu-miR-705 MIMAT0003495 Mus musculus miR-705 12 80
mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p 12 80
hsa-miR-1296-3p MIMAT0026637 Homo sapiens miR-1296-3p 12 80
rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus miR-rL1-... 12 80
aga-miR-278 MIMAT0001511 Anopheles gambiae miR-278 12 80
ame-miR-278 MIMAT0001482 Apis mellifera miR-278 12 80
dps-miR-278 MIMAT0001242 Drosophila pseudoobscura miR-278 12 80
dme-miR-278-3p MIMAT0000339 Drosophila melanogaster miR-278-3p 12 80
>efu-miR-9272 MIMAT0034905 Eptesicus fuscus miR-9272
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggg 7
|||||||
Sbjct: 8 ggtgggg 2
>bbe-miR-2058-3p MIMAT0031616 Branchiostoma belcheri miR-2058-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>mdo-miR-92a-2-5p MIMAT0031050 Monodelphis domestica
miR-92a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>ggo-miR-3151 MIMAT0024259 Gorilla gorilla miR-3151
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 1 ggtgggg 7
>ptr-miR-3151 MIMAT0024031 Pan troglodytes miR-3151
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 1 ggtgggg 7
>hsa-miR-4472 MIMAT0018999 Homo sapiens miR-4472
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 1 ggtgggg 7
>hsa-miR-4447 MIMAT0018966 Homo sapiens miR-4447
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 1 ggtgggg 7
>ppy-miR-1224-3p MIMAT0016159 Pongo pygmaeus miR-1224-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggg 7
|||||||
Sbjct: 7 ggtgggg 1
>hsa-miR-3151-5p MIMAT0015024 Homo sapiens miR-3151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 1 ggtgggg 7
>bta-miR-2888 MIMAT0013846 Bos taurus miR-2888
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 1 ggtgggg 7
>bfl-miR-2058-3p MIMAT0019167 Branchiostoma floridae miR-2058-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>mml-miR-92a-5p MIMAT0026809 Macaca mulatta miR-92a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>oan-miR-92a-1-5p MIMAT0006857 Ornithorhynchus anatinus
miR-92a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>mml-miR-1224-3p MIMAT0005571 Macaca mulatta miR-1224-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggg 7
|||||||
Sbjct: 7 ggtgggg 1
>ptr-miR-1224-3p MIMAT0005569 Pan troglodytes miR-1224-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggg 7
|||||||
Sbjct: 7 ggtgggg 1
>mmu-miR-1224-3p MIMAT0017231 Mus musculus miR-1224-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggg 7
|||||||
Sbjct: 7 ggtgggg 1
>hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgggg 7
|||||||
Sbjct: 7 ggtgggg 1
>rno-miR-92a-2-5p MIMAT0017108 Rattus norvegicus miR-92a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>mmu-miR-92a-2-5p MIMAT0004635 Mus musculus miR-92a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>hsa-miR-92a-2-5p MIMAT0004508 Homo sapiens miR-92a-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgggg 7
|||||||
Sbjct: 2 ggtgggg 8
>pxy-miR-8498 MIMAT0033708 Plutella xylostella miR-8498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>bbe-miR-705-5p MIMAT0031716 Branchiostoma belcheri miR-705-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>bbe-miR-278-5p MIMAT0031659 Branchiostoma belcheri miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ppe-miR8128-3p MIMAT0031551 Prunus persica miR8128-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>prd-miR-7961-3p MIMAT0030821 Panagrellus redivivus miR-7961-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>ptc-miR7836 MIMAT0030408 Populus trichocarpa miR7836
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ptc-miR7837 MIMAT0030393 Populus trichocarpa miR7837
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>lva-miR-278-3p MIMAT0032219 Lytechinus variegatus miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>pmi-miR-278-3p MIMAT0032172 Patiria miniata miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>oan-miR-7417-5p MIMAT0028982 Ornithorhynchus anatinus
miR-7417-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggg 7
||||||
Sbjct: 8 gtgggg 3
>mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>mmu-miR-7085-5p MIMAT0028076 Mus musculus miR-7085-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>mmu-miR-7000-3p MIMAT0027903 Mus musculus miR-7000-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>mmu-miR-6963-5p MIMAT0027826 Mus musculus miR-6963-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>mmu-miR-6952-5p MIMAT0027804 Mus musculus miR-6952-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>hsa-miR-6796-5p MIMAT0027492 Homo sapiens miR-6796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>hsa-miR-6786-5p MIMAT0027472 Homo sapiens miR-6786-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>hsa-miR-6766-5p MIMAT0027432 Homo sapiens miR-6766-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>hsa-miR-6756-5p MIMAT0027412 Homo sapiens miR-6756-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>hme-miR-278 MIMAT0024960 Heliconius melpomene miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>bta-miR-1260b MIMAT0024568 Bos taurus miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>mse-miR-278 MIMAT0024451 Manduca sexta miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ppy-miR-1260b MIMAT0024370 Pongo pygmaeus miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>mml-miR-1296-3p MIMAT0027114 Macaca mulatta miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>mml-miR-1260b MIMAT0024319 Macaca mulatta miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>ggo-miR-1260b MIMAT0024240 Gorilla gorilla miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>ptr-miR-1260b MIMAT0024066 Pan troglodytes miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>cgr-miR-181d-3p MIMAT0023804 Cricetulus griseus miR-181d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 6 ggtggg 1
>cgr-miR-1260 MIMAT0023746 Cricetulus griseus miR-1260
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>tur-miR-278-3p MIMAT0023031 Tetranychus urticae miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>cin-miR-5596b-3p MIMAT0022328 Ciona intestinalis miR-5596b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggg 7
||||||
Sbjct: 8 gtgggg 3
>bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggg 7
||||||
Sbjct: 7 gtgggg 2
>bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>mmu-miR-5132-5p MIMAT0020643 Mus musculus miR-5132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>mmu-miR-5129-5p MIMAT0020640 Mus musculus miR-5129-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>hsa-miR-4769-5p MIMAT0019922 Homo sapiens miR-4769-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>hsa-miR-4758-3p MIMAT0019904 Homo sapiens miR-4758-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggg 7
||||||
Sbjct: 8 gtgggg 3
>pma-miR-4589 MIMAT0019622 Petromyzon marinus miR-4589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggg 7
||||||
Sbjct: 8 gtgggg 3
>hsa-miR-4417 MIMAT0018929 Homo sapiens miR-4417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>isc-miR-278 MIMAT0016930 Ixodes scapularis miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ssc-miR-1296-3p MIMAT0017976 Sus scrofa miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>ppy-miR-1260a MIMAT0016184 Pongo pygmaeus miR-1260a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>hsa-miR-1260b MIMAT0015041 Homo sapiens miR-1260b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>api-miR-278 MIMAT0014723 Acyrthosiphon pisum miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>cqu-miR-278 MIMAT0014377 Culex quinquefasciatus miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>hsv2-miR-H9-3p MIMAT0014352 Herpes Simplex miR-H9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>aae-miR-278-3p MIMAT0014238 Aedes aegypti miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ssc-miR-181d-3p MIMAT0017375 Sus scrofa miR-181d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 6 ggtggg 1
>bta-miR-2897 MIMAT0013855 Bos taurus miR-2897
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>dpu-miR-278 MIMAT0012653 Daphnia pulex miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>bfl-miR-278 MIMAT0010135 Branchiostoma floridae miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>bfl-miR-705 MIMAT0010013 Branchiostoma floridae miR-705
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>spu-miR-278-3p MIMAT0009674 Strongylocentrotus purpuratus
miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>sko-miR-278 MIMAT0009640 Saccoglossus kowalevskii miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>lgi-miR-278 MIMAT0009592 Lottia gigantea miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>cte-miR-278 MIMAT0009538 Capitella teleta miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>bmo-miR-278-3p MIMAT0009164 Bombyx mori miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dya-miR-278 MIMAT0009086 Drosophila yakuba miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dwi-miR-278 MIMAT0009029 Drosophila willistoni miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dvi-miR-278-3p MIMAT0008937 Drosophila virilis miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dsi-miR-278 MIMAT0008891 Drosophila simulans miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dse-miR-278 MIMAT0008781 Drosophila sechellia miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dpe-miR-278 MIMAT0008726 Drosophila persimilis miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dmo-miR-278 MIMAT0008676 Drosophila mojavensis miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dgr-miR-278 MIMAT0008597 Drosophila grimshawi miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>der-miR-278 MIMAT0008530 Drosophila erecta miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dan-miR-278 MIMAT0008470 Drosophila ananassae miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>mml-miR-194-3p MIMAT0026837 Macaca mulatta miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>oan-miR-1391-3p MIMAT0007186 Ornithorhynchus anatinus
miR-1391-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>hsa-miR-1260a MIMAT0005911 Homo sapiens miR-1260a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>mml-miR-1227 MIMAT0005581 Macaca mulatta miR-1227
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>hsa-miR-1227-5p MIMAT0022941 Homo sapiens miR-1227-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>mmu-miR-181d-3p MIMAT0017264 Mus musculus miR-181d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 6 ggtggg 1
>sme-miR-278-3p MIMAT0004011 Schmidtea mediterranea miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>mmu-miR-705 MIMAT0003495 Mus musculus miR-705
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtggg 6
||||||
Sbjct: 8 ggtggg 3
>hsa-miR-1296-3p MIMAT0026637 Homo sapiens miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus
miR-rL1-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 1 ggtggg 6
>aga-miR-278 MIMAT0001511 Anopheles gambiae miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>ame-miR-278 MIMAT0001482 Apis mellifera miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dps-miR-278 MIMAT0001242 Drosophila pseudoobscura miR-278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
>dme-miR-278-3p MIMAT0000339 Drosophila melanogaster miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtggg 6
||||||
Sbjct: 3 ggtggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 176
Number of extensions: 155
Number of successful extensions: 112
Number of sequences better than 100.0: 112
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 112
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
