BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s59
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p 14 27
efu-miR-9323 MIMAT0035050 Eptesicus fuscus miR-9323 14 27
bbe-miR-2057-3p MIMAT0031614 Branchiostoma belcheri miR-2057-3p 14 27
mdo-miR-7254-5p MIMAT0028474 Monodelphis domestica miR-7254-5p 14 27
gga-miR-6712-5p MIMAT0025822 Gallus gallus miR-6712-5p 14 27
tca-miR-3897-3p MIMAT0018899 Tribolium castaneum miR-3897-3p 14 27
ame-miR-3751 MIMAT0018521 Apis mellifera miR-3751 14 27
mmu-miR-3102-5p.2-5p MIMAT0014934 Mus musculus miR-3102-5p.2-5p 14 27
eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p 14 27
eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c 14 27
mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p 14 27
gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p 14 27
>oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggtg 7
|||||||
Sbjct: 7 ggtggtg 1
>efu-miR-9323 MIMAT0035050 Eptesicus fuscus miR-9323
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggtg 7
|||||||
Sbjct: 8 ggtggtg 2
>bbe-miR-2057-3p MIMAT0031614 Branchiostoma belcheri miR-2057-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggtg 7
|||||||
Sbjct: 2 ggtggtg 8
>mdo-miR-7254-5p MIMAT0028474 Monodelphis domestica miR-7254-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggtg 7
|||||||
Sbjct: 8 ggtggtg 2
>gga-miR-6712-5p MIMAT0025822 Gallus gallus miR-6712-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggtgg 8
|||||||
Sbjct: 2 gtggtgg 8
>tca-miR-3897-3p MIMAT0018899 Tribolium castaneum miR-3897-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggtgg 8
|||||||
Sbjct: 2 gtggtgg 8
>ame-miR-3751 MIMAT0018521 Apis mellifera miR-3751
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggtg 7
|||||||
Sbjct: 2 ggtggtg 8
>mmu-miR-3102-5p.2-5p MIMAT0014934 Mus musculus miR-3102-5p.2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggtg 7
|||||||
Sbjct: 1 ggtggtg 7
>eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtggtg 7
|||||||
Sbjct: 2 ggtggtg 8
>eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggtg 7
|||||||
Sbjct: 7 ggtggtg 1
>mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtggtg 7
|||||||
Sbjct: 7 ggtggtg 1
>gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggtgg 8
|||||||
Sbjct: 2 gtggtgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 152
Number of extensions: 140
Number of successful extensions: 99
Number of sequences better than 100.0: 12
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
