BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
lus-miR398f MIMAT0031861 Linum usitatissimum miR398f 16 6.9
ata-miR398g-3p MIMAT0037231 Aegilops tauschii miR398g-3p 14 27
ata-miR398f-3p MIMAT0037177 Aegilops tauschii miR398f-3p 14 27
gma-miR398d MIMAT0036343 Glycine max miR398d 14 27
bra-miR398-3p MIMAT0035855 Brassica rapa miR398-3p 14 27
nve-miR-9425 MIMAT0035384 Nematostella vectensis miR-9425 14 27
nve-miR-9416 MIMAT0035372 Nematostella vectensis miR-9416 14 27
lus-miR398e MIMAT0031860 Linum usitatissimum miR398e 14 27
lus-miR398d MIMAT0031859 Linum usitatissimum miR398d 14 27
mdo-miR-1545b-5p MIMAT0028750 Monodelphis domestica miR-1545b-5p 14 27
cme-miR398a MIMAT0026174 Cucumis melo miR398a 14 27
cme-miR398b MIMAT0026149 Cucumis melo miR398b 14 27
mdm-miR398c MIMAT0026000 Malus domestica miR398c 14 27
mdm-miR398b MIMAT0025999 Malus domestica miR398b 14 27
mdm-miR398a MIMAT0025998 Malus domestica miR398a 14 27
ppe-miR398b MIMAT0027328 Prunus persica miR398b 14 27
ppe-miR398a-3p MIMAT0027294 Prunus persica miR398a-3p 14 27
nta-miR398 MIMAT0024712 Nicotiana tabacum miR398 14 27
lus-miR398c MIMAT0027214 Linum usitatissimum miR398c 14 27
lus-miR398b MIMAT0027160 Linum usitatissimum miR398b 14 27
lus-miR398a MIMAT0027147 Linum usitatissimum miR398a 14 27
cca-miR398 MIMAT0024532 Cynara cardunculus miR398 14 27
ssl-miR398 MIMAT0022519 Salvia sclarea miR398 14 27
osa-miR5544 MIMAT0022180 Oryza sativa miR5544 14 27
asu-miR-5355-5p MIMAT0021570 Ascaris suum miR-5355-5p 14 27
bdi-miR398a MIMAT0020691 Brachypodium distachyon miR398a 14 27
gma-miR398c MIMAT0020997 Glycine max miR398c 14 27
tcc-miR398b MIMAT0020434 Theobroma cacao miR398b 14 27
tcc-miR398a MIMAT0020433 Theobroma cacao miR398a 14 27
tae-miR398 MIMAT0018225 Triticum aestivum miR398 14 27
hsa-miR-4273 MIMAT0016903 Homo sapiens miR-4273 14 27
ahy-miR398 MIMAT0016327 Arachis hypogaea miR398 14 27
aly-miR398b-3p MIMAT0017568 Arabidopsis lyrata miR398b-3p 14 27
aly-miR398a-3p MIMAT0017566 Arabidopsis lyrata miR398a-3p 14 27
ghr-miR398 MIMAT0014337 Gossypium hirsutum miR398 14 27
gra-miR398 MIMAT0014328 Gossypium raimondii miR398 14 27
aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p 14 27
rco-miR398b MIMAT0014195 Ricinus communis miR398b 14 27
rco-miR398a MIMAT0014194 Ricinus communis miR398a 14 27
csi-miR398 MIMAT0014079 Citrus sinensis miR398 14 27
sbi-miR398 MIMAT0014046 Sorghum bicolor miR398 14 27
zma-miR398b-3p MIMAT0014021 Zea mays miR398b-3p 14 27
zma-miR398a-3p MIMAT0014020 Zea mays miR398a-3p 14 27
aqc-miR398b MIMAT0012579 Aquilegia caerulea miR398b 14 27
aqc-miR398a MIMAT0012578 Aquilegia caerulea miR398a 14 27
bol-miR398a-3p MIMAT0010174 Brassica oleracea miR398a-3p 14 27
vvi-miR398c MIMAT0006564 Vitis vinifera miR398c 14 27
vvi-miR398b MIMAT0006563 Vitis vinifera miR398b 14 27
osa-miR810b.1 MIMAT0005977 Oryza sativa miR810b.1 14 27
vvi-miR398a MIMAT0005727 Vitis vinifera miR398a 14 27
ppt-miR900-3p MIMAT0004370 Physcomitrella patens miR900-3p 14 27
mtr-miR398c MIMAT0011097 Medicago truncatula miR398c 14 27
mtr-miR398b MIMAT0011088 Medicago truncatula miR398b 14 27
mtr-miR398a-3p MIMAT0011085 Medicago truncatula miR398a-3p 14 27
ptc-miR398c-3p MIMAT0002043 Populus trichocarpa miR398c-3p 14 27
ptc-miR398b MIMAT0002042 Populus trichocarpa miR398b 14 27
ptc-miR398a MIMAT0002041 Populus trichocarpa miR398a 14 27
gma-miR398b MIMAT0001690 Glycine max miR398b 14 27
gma-miR398a MIMAT0001689 Glycine max miR398a 14 27
osa-miR398b MIMAT0000983 Oryza sativa miR398b 14 27
osa-miR398a MIMAT0000982 Oryza sativa miR398a 14 27
ath-miR398c-3p MIMAT0000950 Arabidopsis thaliana miR398c-3p 14 27
ath-miR398b-3p MIMAT0000949 Arabidopsis thaliana miR398b-3p 14 27
ath-miR398a-3p MIMAT0000948 Arabidopsis thaliana miR398a-3p 14 27
>lus-miR398f MIMAT0031861 Linum usitatissimum miR398f
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ggtgttct 8
||||||||
Sbjct: 1 ggtgttct 8
>ata-miR398g-3p MIMAT0037231 Aegilops tauschii miR398g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ata-miR398f-3p MIMAT0037177 Aegilops tauschii miR398f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>gma-miR398d MIMAT0036343 Glycine max miR398d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>bra-miR398-3p MIMAT0035855 Brassica rapa miR398-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>nve-miR-9425 MIMAT0035384 Nematostella vectensis miR-9425
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgttct 8
|||||||
Sbjct: 8 gtgttct 2
>nve-miR-9416 MIMAT0035372 Nematostella vectensis miR-9416
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgttct 8
|||||||
Sbjct: 8 gtgttct 2
>lus-miR398e MIMAT0031860 Linum usitatissimum miR398e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>lus-miR398d MIMAT0031859 Linum usitatissimum miR398d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mdo-miR-1545b-5p MIMAT0028750 Monodelphis domestica
miR-1545b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>cme-miR398a MIMAT0026174 Cucumis melo miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>cme-miR398b MIMAT0026149 Cucumis melo miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mdm-miR398c MIMAT0026000 Malus domestica miR398c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mdm-miR398b MIMAT0025999 Malus domestica miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mdm-miR398a MIMAT0025998 Malus domestica miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ppe-miR398b MIMAT0027328 Prunus persica miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ppe-miR398a-3p MIMAT0027294 Prunus persica miR398a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>nta-miR398 MIMAT0024712 Nicotiana tabacum miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>lus-miR398c MIMAT0027214 Linum usitatissimum miR398c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>lus-miR398b MIMAT0027160 Linum usitatissimum miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>lus-miR398a MIMAT0027147 Linum usitatissimum miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>cca-miR398 MIMAT0024532 Cynara cardunculus miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ssl-miR398 MIMAT0022519 Salvia sclarea miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>osa-miR5544 MIMAT0022180 Oryza sativa miR5544
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgttct 8
|||||||
Sbjct: 7 gtgttct 1
>asu-miR-5355-5p MIMAT0021570 Ascaris suum miR-5355-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgttc 7
|||||||
Sbjct: 8 ggtgttc 2
>bdi-miR398a MIMAT0020691 Brachypodium distachyon miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>gma-miR398c MIMAT0020997 Glycine max miR398c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>tcc-miR398b MIMAT0020434 Theobroma cacao miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>tcc-miR398a MIMAT0020433 Theobroma cacao miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>tae-miR398 MIMAT0018225 Triticum aestivum miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>hsa-miR-4273 MIMAT0016903 Homo sapiens miR-4273
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 1 gtgttct 7
>ahy-miR398 MIMAT0016327 Arachis hypogaea miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>aly-miR398b-3p MIMAT0017568 Arabidopsis lyrata miR398b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>aly-miR398a-3p MIMAT0017566 Arabidopsis lyrata miR398a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ghr-miR398 MIMAT0014337 Gossypium hirsutum miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>gra-miR398 MIMAT0014328 Gossypium raimondii miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>rco-miR398b MIMAT0014195 Ricinus communis miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>rco-miR398a MIMAT0014194 Ricinus communis miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>csi-miR398 MIMAT0014079 Citrus sinensis miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>sbi-miR398 MIMAT0014046 Sorghum bicolor miR398
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>zma-miR398b-3p MIMAT0014021 Zea mays miR398b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>zma-miR398a-3p MIMAT0014020 Zea mays miR398a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>aqc-miR398b MIMAT0012579 Aquilegia caerulea miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>aqc-miR398a MIMAT0012578 Aquilegia caerulea miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>bol-miR398a-3p MIMAT0010174 Brassica oleracea miR398a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>vvi-miR398c MIMAT0006564 Vitis vinifera miR398c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>vvi-miR398b MIMAT0006563 Vitis vinifera miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>osa-miR810b.1 MIMAT0005977 Oryza sativa miR810b.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgttc 7
|||||||
Sbjct: 8 ggtgttc 2
>vvi-miR398a MIMAT0005727 Vitis vinifera miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ppt-miR900-3p MIMAT0004370 Physcomitrella patens miR900-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mtr-miR398c MIMAT0011097 Medicago truncatula miR398c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mtr-miR398b MIMAT0011088 Medicago truncatula miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>mtr-miR398a-3p MIMAT0011085 Medicago truncatula miR398a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ptc-miR398c-3p MIMAT0002043 Populus trichocarpa miR398c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ptc-miR398b MIMAT0002042 Populus trichocarpa miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ptc-miR398a MIMAT0002041 Populus trichocarpa miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>gma-miR398b MIMAT0001690 Glycine max miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>gma-miR398a MIMAT0001689 Glycine max miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>osa-miR398b MIMAT0000983 Oryza sativa miR398b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>osa-miR398a MIMAT0000982 Oryza sativa miR398a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ath-miR398c-3p MIMAT0000950 Arabidopsis thaliana miR398c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ath-miR398b-3p MIMAT0000949 Arabidopsis thaliana miR398b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
>ath-miR398a-3p MIMAT0000948 Arabidopsis thaliana miR398a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgttct 8
|||||||
Sbjct: 2 gtgttct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 272
Number of extensions: 207
Number of successful extensions: 141
Number of sequences better than 100.0: 64
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 64
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)