BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-10b
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8948 MIMAT0034477 Equus caballus miR-8948 14 20
mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p 14 20
kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated miR-K12-10b 14 20
hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p 14 20
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p 12 80
dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p 12 80
efu-miR-9312 MIMAT0034986 Eptesicus fuscus miR-9312 12 80
efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257 12 80
psj-miR8788b-3p MIMAT0034273 Phytophthora sojae miR8788b-3p 12 80
psj-miR8788a-3p MIMAT0034271 Phytophthora sojae miR8788a-3p 12 80
ath-miR8182 MIMAT0032781 Arabidopsis thaliana miR8182 12 80
lus-miR398f MIMAT0031861 Linum usitatissimum miR398f 12 80
prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus miR-5358b-5p 12 80
mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p 12 80
mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360 12 80
hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971 12 80
ggo-miR-609 MIMAT0024301 Gorilla gorilla miR-609 12 80
ggo-miR-505 MIMAT0024228 Gorilla gorilla miR-505 12 80
cgr-miR-505-3p MIMAT0023980 Cricetulus griseus miR-505-3p 12 80
hco-miR-5924a-5p MIMAT0023403 Haemonchus contortus miR-5924a-5p 12 80
gma-miR5785 MIMAT0023191 Glycine max miR5785 12 80
osa-miR5489 MIMAT0022122 Oryza sativa miR5489 12 80
asu-miR-5355-5p MIMAT0021570 Ascaris suum miR-5355-5p 12 80
ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015 12 80
gma-miR1507c-5p MIMAT0021005 Glycine max miR1507c-5p 12 80
dme-miR-4973-3p MIMAT0020202 Drosophila melanogaster miR-4973-3p 12 80
sko-miR-4826-3p MIMAT0020033 Saccoglossus kowalevskii miR-4826-3p 12 80
tca-miR-279c-5p MIMAT0018730 Tribolium castaneum miR-279c-5p 12 80
ame-miR-971 MIMAT0018544 Apis mellifera miR-971 12 80
bta-miR-3602 MIMAT0016937 Bos taurus miR-3602 12 80
cin-miR-4121-3p MIMAT0016713 Ciona intestinalis miR-4121-3p 12 80
cin-miR-4076-3p MIMAT0016641 Ciona intestinalis miR-4076-3p 12 80
cin-miR-4063-5p MIMAT0016614 Ciona intestinalis miR-4063-5p 12 80
rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592 12 80
rno-miR-3591 MIMAT0017893 Rattus norvegicus miR-3591 12 80
ppy-miR-653 MIMAT0016086 Pongo pygmaeus miR-653 12 80
api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971 12 80
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505 12 80
eca-miR-653 MIMAT0012947 Equus caballus miR-653 12 80
bmo-miR-2752 MIMAT0012632 Bombyx mori miR-2752 12 80
dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p 12 80
cfa-miR-653 MIMAT0009924 Canis familiaris miR-653 12 80
bta-miR-653 MIMAT0009358 Bos taurus miR-653 12 80
ptr-miR-653 MIMAT0008303 Pan troglodytes miR-653 12 80
ptr-miR-609 MIMAT0008272 Pan troglodytes miR-609 12 80
mml-miR-653-5p MIMAT0006494 Macaca mulatta miR-653-5p 12 80
mml-miR-609 MIMAT0006462 Macaca mulatta miR-609 12 80
osa-miR810b.1 MIMAT0005977 Oryza sativa miR810b.1 12 80
smo-miR1082b MIMAT0005233 Selaginella moellendorffii miR1082b 12 80
mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p 12 80
dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p 12 80
mmu-miR-653-5p MIMAT0004943 Mus musculus miR-653-5p 12 80
rno-miR-505-3p MIMAT0003380 Rattus norvegicus miR-505-3p 12 80
hsa-miR-653-5p MIMAT0003328 Homo sapiens miR-653-5p 12 80
hsa-miR-609 MIMAT0003277 Homo sapiens miR-609 12 80
kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated miR-K... 12 80
>eca-miR-8948 MIMAT0034477 Equus caballus miR-8948
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgttg 7
|||||||
Sbjct: 2 ggtgttg 8
>mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgttg 7
|||||||
Sbjct: 7 ggtgttg 1
>kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated
miR-K12-10b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtgttg 7
|||||||
Sbjct: 2 ggtgttg 8
>hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtgttg 7
|||||||
Sbjct: 7 ggtgttg 1
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 7 gtgttg 2
>dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>efu-miR-9312 MIMAT0034986 Eptesicus fuscus miR-9312
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgtt 6
||||||
Sbjct: 6 ggtgtt 1
>efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>psj-miR8788b-3p MIMAT0034273 Phytophthora sojae miR8788b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>psj-miR8788a-3p MIMAT0034271 Phytophthora sojae miR8788a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>ath-miR8182 MIMAT0032781 Arabidopsis thaliana miR8182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>lus-miR398f MIMAT0031861 Linum usitatissimum miR398f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 1 ggtgtt 6
>prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus
miR-5358b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>ggo-miR-609 MIMAT0024301 Gorilla gorilla miR-609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>ggo-miR-505 MIMAT0024228 Gorilla gorilla miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>cgr-miR-505-3p MIMAT0023980 Cricetulus griseus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>hco-miR-5924a-5p MIMAT0023403 Haemonchus contortus miR-5924a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 6 gtgttg 1
>gma-miR5785 MIMAT0023191 Glycine max miR5785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>osa-miR5489 MIMAT0022122 Oryza sativa miR5489
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>asu-miR-5355-5p MIMAT0021570 Ascaris suum miR-5355-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgtt 6
||||||
Sbjct: 8 ggtgtt 3
>ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>gma-miR1507c-5p MIMAT0021005 Glycine max miR1507c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>dme-miR-4973-3p MIMAT0020202 Drosophila melanogaster
miR-4973-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>sko-miR-4826-3p MIMAT0020033 Saccoglossus kowalevskii
miR-4826-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>tca-miR-279c-5p MIMAT0018730 Tribolium castaneum miR-279c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>ame-miR-971 MIMAT0018544 Apis mellifera miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>bta-miR-3602 MIMAT0016937 Bos taurus miR-3602
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>cin-miR-4121-3p MIMAT0016713 Ciona intestinalis miR-4121-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>cin-miR-4076-3p MIMAT0016641 Ciona intestinalis miR-4076-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 1 ggtgtt 6
>cin-miR-4063-5p MIMAT0016614 Ciona intestinalis miR-4063-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgtt 6
||||||
Sbjct: 6 ggtgtt 1
>rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>rno-miR-3591 MIMAT0017893 Rattus norvegicus miR-3591
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgtt 6
||||||
Sbjct: 6 ggtgtt 1
>ppy-miR-653 MIMAT0016086 Pongo pygmaeus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 7 gtgttg 2
>eca-miR-653 MIMAT0012947 Equus caballus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>bmo-miR-2752 MIMAT0012632 Bombyx mori miR-2752
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>cfa-miR-653 MIMAT0009924 Canis familiaris miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>bta-miR-653 MIMAT0009358 Bos taurus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>ptr-miR-653 MIMAT0008303 Pan troglodytes miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>ptr-miR-609 MIMAT0008272 Pan troglodytes miR-609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>mml-miR-653-5p MIMAT0006494 Macaca mulatta miR-653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>mml-miR-609 MIMAT0006462 Macaca mulatta miR-609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>osa-miR810b.1 MIMAT0005977 Oryza sativa miR810b.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggtgtt 6
||||||
Sbjct: 8 ggtgtt 3
>smo-miR1082b MIMAT0005233 Selaginella moellendorffii miR1082b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 6 gtgttg 1
>dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>mmu-miR-653-5p MIMAT0004943 Mus musculus miR-653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>rno-miR-505-3p MIMAT0003380 Rattus norvegicus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>hsa-miR-653-5p MIMAT0003328 Homo sapiens miR-653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>hsa-miR-609 MIMAT0003277 Homo sapiens miR-609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggtgtt 6
||||||
Sbjct: 3 ggtgtt 8
>kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated
miR-K12-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 83
Number of extensions: 79
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
