BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d21-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

chi-miR-497-3p MIMAT0036260 Capra hircus miR-497-3p                    14      20
pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497                 14      20
prd-miR-7880c-5p MIMAT0030590 Panagrellus redivivus miR-7880c-5p       14      20
mmu-miR-6715-3p MIMAT0029877 Mus musculus miR-6715-3p                  14      20
dev-miR-D21-5p MIMAT0028196 Duck enteritis miR-D21-5p                  14      20
hsa-miR-6715a-3p MIMAT0025841 Homo sapiens miR-6715a-3p                14      20
pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596                  14      20
tca-miR-3883-3p MIMAT0018863 Tribolium castaneum miR-3883-3p           14      20
cin-miR-92b-5p MIMAT0015254 Ciona intestinalis miR-92b-5p              14      20
rno-miR-497-3p MIMAT0017230 Rattus norvegicus miR-497-3p               14      20
efu-miR-507c MIMAT0035074 Eptesicus fuscus miR-507c                    12      80
eca-miR-9147 MIMAT0034723 Equus caballus miR-9147                      12      80
str-miR-8386-5p MIMAT0033432 Strongyloides ratti miR-8386-5p           12      80
stu-miR7980b-5p MIMAT0031205 Solanum tuberosum miR7980b-5p             12      80
hsa-miR-7850-5p MIMAT0030425 Homo sapiens miR-7850-5p                  12      80
bdi-miR166h-5p MIMAT0030087 Brachypodium distachyon miR166h-5p         12      80
mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p           12      80
cme-miR7130 MIMAT0026184 Cucumis melo miR7130                          12      80
hsa-miR-6771-3p MIMAT0027443 Homo sapiens miR-6771-3p                  12      80
hsa-miR-6715b-3p MIMAT0025843 Homo sapiens miR-6715b-3p                12      80
cgr-miR-497-3p MIMAT0023971 Cricetulus griseus miR-497-3p              12      80
hco-miR-5904c MIMAT0023418 Haemonchus contortus miR-5904c              12      80
hco-miR-5919 MIMAT0023392 Haemonchus contortus miR-5919                12      80
hco-miR-5898-3p MIMAT0023343 Haemonchus contortus miR-5898-3p          12      80
bra-miR5717 MIMAT0023014 Brassica rapa miR5717                         12      80
sbi-miR5565e MIMAT0022243 Sorghum bicolor miR5565e                     12      80
asu-miR-5363-3p MIMAT0021589 Ascaris suum miR-5363-3p                  12      80
osa-miR5073 MIMAT0020555 Oryza sativa miR5073                          12      80
hsa-miR-4748 MIMAT0019884 Homo sapiens miR-4748                        12      80
pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p            12      80
hsa-miR-4464 MIMAT0018988 Homo sapiens miR-4464                        12      80
vvi-miR3636-5p MIMAT0018045 Vitis vinifera miR3636-5p                  12      80
aly-miR861-5p MIMAT0017651 Arabidopsis lyrata miR861-5p                12      80
bmo-miR-3385-5p MIMAT0015581 Bombyx mori miR-3385-5p                   12      80
osa-miR2873a MIMAT0013823 Oryza sativa miR2873a                        12      80
hvt-miR-H18-5p MIMAT0012874 Herpesvirus of miR-H18-5p                  12      80
mdo-miR-497-3p MIMAT0026946 Monodelphis domestica miR-497-3p           12      80
cte-miR-2696 MIMAT0013557 Capitella teleta miR-2696                    12      80
mtr-miR2661 MIMAT0013468 Medicago truncatula miR2661                   12      80
bta-miR-1603 MIMAT0011823 Bos taurus miR-1603                          12      80
gma-miR2107 MIMAT0010083 Glycine max miR2107                           12      80
aqu-miR-2014-3p MIMAT0009687 Amphimedon queenslandica miR-2014-3p      12      80
osa-miR1879 MIMAT0007836 Oryza sativa miR1879                          12      80
mml-miR-497-3p MIMAT0026887 Macaca mulatta miR-497-3p                  12      80
gga-miR-1555-5p MIMAT0026774 Gallus gallus miR-1555-5p                 12      80
dme-miR-956-5p MIMAT0020850 Drosophila melanogaster miR-956-5p         12      80
mmu-miR-497a-3p MIMAT0017247 Mus musculus miR-497a-3p                  12      80
hsa-miR-497-3p MIMAT0004768 Homo sapiens miR-497-3p                    12      80
zma-miR166j-5p MIMAT0015185 Zea mays miR166j-5p                        12      80
osa-miR166k-5p MIMAT0022870 Oryza sativa miR166k-5p                    12      80
>chi-miR-497-3p MIMAT0036260 Capra hircus miR-497-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 8 ggtttgg 2
>pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 2 ggtttgg 8
>prd-miR-7880c-5p MIMAT0030590 Panagrellus redivivus
         miR-7880c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 2 ggtttgg 8
>mmu-miR-6715-3p MIMAT0029877 Mus musculus miR-6715-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 7 ggtttgg 1
>dev-miR-D21-5p MIMAT0028196 Duck enteritis miR-D21-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 2 ggtttgg 8
>hsa-miR-6715a-3p MIMAT0025841 Homo sapiens miR-6715a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 7 ggtttgg 1
>pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 2 ggtttgg 8
>tca-miR-3883-3p MIMAT0018863 Tribolium castaneum miR-3883-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 8 ggtttgg 2
>cin-miR-92b-5p MIMAT0015254 Ciona intestinalis miR-92b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 2 ggtttgg 8
>rno-miR-497-3p MIMAT0017230 Rattus norvegicus miR-497-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtttgg 7
         |||||||
Sbjct: 7 ggtttgg 1
>efu-miR-507c MIMAT0035074 Eptesicus fuscus miR-507c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 3 gtttgg 8
>eca-miR-9147 MIMAT0034723 Equus caballus miR-9147
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>str-miR-8386-5p MIMAT0033432 Strongyloides ratti miR-8386-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>stu-miR7980b-5p MIMAT0031205 Solanum tuberosum miR7980b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 8 gtttgg 3
>hsa-miR-7850-5p MIMAT0030425 Homo sapiens miR-7850-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 1 gtttgg 6
>bdi-miR166h-5p MIMAT0030087 Brachypodium distachyon miR166h-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 1 ggtttg 6
>mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>cme-miR7130 MIMAT0026184 Cucumis melo miR7130
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 1 gtttgg 6
>hsa-miR-6771-3p MIMAT0027443 Homo sapiens miR-6771-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>hsa-miR-6715b-3p MIMAT0025843 Homo sapiens miR-6715b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 8 ggtttg 3
>cgr-miR-497-3p MIMAT0023971 Cricetulus griseus miR-497-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>hco-miR-5904c MIMAT0023418 Haemonchus contortus miR-5904c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>hco-miR-5919 MIMAT0023392 Haemonchus contortus miR-5919
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 1 gtttgg 6
>hco-miR-5898-3p MIMAT0023343 Haemonchus contortus miR-5898-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 3 gtttgg 8
>bra-miR5717 MIMAT0023014 Brassica rapa miR5717
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 1 gtttgg 6
>sbi-miR5565e MIMAT0022243 Sorghum bicolor miR5565e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 3 gtttgg 8
>asu-miR-5363-3p MIMAT0021589 Ascaris suum miR-5363-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>osa-miR5073 MIMAT0020555 Oryza sativa miR5073
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 1 gtttgg 6
>hsa-miR-4748 MIMAT0019884 Homo sapiens miR-4748
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>hsa-miR-4464 MIMAT0018988 Homo sapiens miR-4464
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>vvi-miR3636-5p MIMAT0018045 Vitis vinifera miR3636-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>aly-miR861-5p MIMAT0017651 Arabidopsis lyrata miR861-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 1 gtttgg 6
>bmo-miR-3385-5p MIMAT0015581 Bombyx mori miR-3385-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 8 ggtttg 3
>osa-miR2873a MIMAT0013823 Oryza sativa miR2873a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 3 gtttgg 8
>hvt-miR-H18-5p MIMAT0012874 Herpesvirus of miR-H18-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 8 ggtttg 3
>mdo-miR-497-3p MIMAT0026946 Monodelphis domestica miR-497-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>cte-miR-2696 MIMAT0013557 Capitella teleta miR-2696
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>mtr-miR2661 MIMAT0013468 Medicago truncatula miR2661
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>bta-miR-1603 MIMAT0011823 Bos taurus miR-1603
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 3 ggtttg 8
>gma-miR2107 MIMAT0010083 Glycine max miR2107
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>aqu-miR-2014-3p MIMAT0009687 Amphimedon queenslandica
         miR-2014-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 8 gtttgg 3
>osa-miR1879 MIMAT0007836 Oryza sativa miR1879
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 3 gtttgg 8
>mml-miR-497-3p MIMAT0026887 Macaca mulatta miR-497-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>gga-miR-1555-5p MIMAT0026774 Gallus gallus miR-1555-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 8 ggtttg 3
>dme-miR-956-5p MIMAT0020850 Drosophila melanogaster miR-956-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtttgg 7
         ||||||
Sbjct: 3 gtttgg 8
>mmu-miR-497a-3p MIMAT0017247 Mus musculus miR-497a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>hsa-miR-497-3p MIMAT0004768 Homo sapiens miR-497-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 6 ggtttg 1
>zma-miR166j-5p MIMAT0015185 Zea mays miR166j-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 1 ggtttg 6
>osa-miR166k-5p MIMAT0022870 Oryza sativa miR166k-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttg 6
         ||||||
Sbjct: 1 ggtttg 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 73
Number of extensions: 63
Number of successful extensions: 50
Number of sequences better than 100.0: 50
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)