BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hpv6-miR-h1
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p           14      20
bdi-miR7725b-3p.1 MIMAT0030183 Brachypodium distachyon miR7725b-...    14      20
bta-miR-2285h MIMAT0024583 Bos taurus miR-2285h                        14      20
hco-miR-5917 MIMAT0023390 Haemonchus contortus miR-5917                14      20
cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p          14      20
bmo-miR-3258 MIMAT0015442 Bombyx mori miR-3258                         14      20
crm-miR-81-5p MIMAT0011569 Caenorhabditis remanei miR-81-5p            14      20
osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p                    14      20
gga-miR-1798-3p MIMAT0007714 Gallus gallus miR-1798-3p                 14      20
oan-miR-1422d-3p MIMAT0007094 Ornithorhynchus anatinus miR-1422d-3p    14      20
oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus miR-1422k-3p    14      20
oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus miR-1422c-3p    14      20
oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus miR-1422e-3p    14      20
cel-miR-82-5p MIMAT0020323 Caenorhabditis elegans miR-82-5p            14      20
cel-miR-81-5p MIMAT0015109 Caenorhabditis elegans miR-81-5p            14      20
oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p          12      80
tae-miR7757-5p MIMAT0035800 Triticum aestivum miR7757-5p               12      80
rno-miR-193b-5p MIMAT0035733 Rattus norvegicus miR-193b-5p             12      80
hsa-miR-548bb-3p MIMAT0035704 Homo sapiens miR-548bb-3p                12      80
cpa-miR8150 MIMAT0031847 Carica papaya miR8150                         12      80
osa-miR5539b MIMAT0031377 Oryza sativa miR5539b                        12      80
stu-miR8030-3p MIMAT0031207 Solanum tuberosum miR8030-3p               12      80
bta-miR-2285ad MIMAT0030446 Bos taurus miR-2285ad                      12      80
bta-miR-2285ac MIMAT0030440 Bos taurus miR-2285ac                      12      80
bta-miR-2285ab MIMAT0030436 Bos taurus miR-2285ab                      12      80
bdi-miR7735-5p MIMAT0030206 Brachypodium distachyon miR7735-5p         12      80
bta-miR-2285u MIMAT0031094 Bos taurus miR-2285u                        12      80
bta-miR-2285y MIMAT0029944 Bos taurus miR-2285y                        12      80
cbr-miR-7588 MIMAT0029592 Caenorhabditis briggsae miR-7588             12      80
mmu-miR-7234-5p MIMAT0028436 Mus musculus miR-7234-5p                  12      80
mmu-miR-7065-3p MIMAT0028035 Mus musculus miR-7065-3p                  12      80
mmu-miR-6986-3p MIMAT0027875 Mus musculus miR-6986-3p                  12      80
gga-miR-6575-3p MIMAT0025658 Gallus gallus miR-6575-3p                 12      80
ptc-miR6468-5p MIMAT0027337 Populus trichocarpa miR6468-5p             12      80
mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344                        12      80
bta-miR-2285l MIMAT0024587 Bos taurus miR-2285l                        12      80
bta-miR-2285k MIMAT0024586 Bos taurus miR-2285k                        12      80
bta-miR-2285i MIMAT0024584 Bos taurus miR-2285i                        12      80
bta-miR-2285f MIMAT0024581 Bos taurus miR-2285f                        12      80
cca-miR6105a MIMAT0024538 Cynara cardunculus miR6105a                  12      80
ggo-miR-548b MIMAT0024260 Gorilla gorilla miR-548b                     12      80
osa-miR5539a MIMAT0022175 Oryza sativa miR5539a                        12      80
asu-miR-5351-5p MIMAT0021560 Ascaris suum miR-5351-5p                  12      80
oar-miR-329a-5p MIMAT0019265 Ovis aries miR-329a-5p                    12      80
oar-miR-329b-5p MIMAT0019263 Ovis aries miR-329b-5p                    12      80
hsa-miR-548ad-3p MIMAT0018946 Homo sapiens miR-548ad-3p                12      80
hsa-miR-548ac MIMAT0018938 Homo sapiens miR-548ac                      12      80
hsa-miR-548z MIMAT0018446 Homo sapiens miR-548z                        12      80
tca-miR-3894-5p MIMAT0018890 Tribolium castaneum miR-3894-5p           12      80
cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p          12      80
bmo-miR-3326 MIMAT0015513 Bombyx mori miR-3326                         12      80
cqu-bantam-5p MIMAT0014420 Culex quinquefasciatus bantam-5p            12      80
aae-bantam-5p MIMAT0014218 Aedes aegypti bantam-5p                     12      80
osa-miR2868 MIMAT0013815 Oryza sativa miR2868                          12      80
eca-miR-703 MIMAT0013002 Equus caballus miR-703                        12      80
cte-miR-2721 MIMAT0013577 Capitella teleta miR-2721                    12      80
bta-miR-2312 MIMAT0011828 Bos taurus miR-2312                          12      80
bta-miR-2301 MIMAT0011812 Bos taurus miR-2301                          12      80
sme-miR-2160-2-3p MIMAT0013776 Schmidtea mediterranea miR-2160-2-3p    12      80
sme-miR-2147d-5p MIMAT0011406 Schmidtea mediterranea miR-2147d-5p      12      80
sme-miR-2156b-5p MIMAT0011393 Schmidtea mediterranea miR-2156b-5p      12      80
sme-miR-2147c MIMAT0011270 Schmidtea mediterranea miR-2147c            12      80
sme-miR-2147b MIMAT0011265 Schmidtea mediterranea miR-2147b            12      80
tca-bantam-5p MIMAT0019178 Tribolium castaneum bantam-5p               12      80
dvi-bantam-5p MIMAT0032086 Drosophila virilis bantam-5p                12      80
xla-miR-703 MIMAT0011148 Xenopus laevis miR-703                        12      80
bmo-bantam-5p MIMAT0015278 Bombyx mori bantam-5p                       12      80
mml-miR-548d-3p MIMAT0006414 Macaca mulatta miR-548d-3p                12      80
mml-miR-548b MIMAT0006411 Macaca mulatta miR-548b                      12      80
mml-miR-329-2-5p MIMAT0031107 Macaca mulatta miR-329-2-5p              12      80
mml-miR-329-1-5p MIMAT0026852 Macaca mulatta miR-329-1-5p              12      80
gga-miR-1815 MIMAT0007512 Gallus gallus miR-1815                       12      80
hsa-miR-1537-3p MIMAT0007399 Homo sapiens miR-1537-3p                  12      80
oan-miR-1422q-3p MIMAT0007317 Ornithorhynchus anatinus miR-1422q-3p    12      80
oan-miR-1339-3p MIMAT0006862 Ornithorhynchus anatinus miR-1339-3p      12      80
hsa-miR-548h-3p MIMAT0022723 Homo sapiens miR-548h-3p                  12      80
cel-miR-794-3p MIMAT0020352 Caenorhabditis elegans miR-794-3p          12      80
sme-bantam-b-5p MIMAT0012085 Schmidtea mediterranea bantam-b-5p        12      80
mmu-miR-703 MIMAT0003493 Mus musculus miR-703                          12      80
hsa-miR-548d-3p MIMAT0003323 Homo sapiens miR-548d-3p                  12      80
hsa-miR-329-5p MIMAT0026555 Homo sapiens miR-329-5p                    12      80
dme-bantam-5p MIMAT0020823 Drosophila melanogaster bantam-5p           12      80
>prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 2 ggttttc 8
>bdi-miR7725b-3p.1 MIMAT0030183 Brachypodium distachyon
         miR7725b-3p.1
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 8 ggttttc 2
>bta-miR-2285h MIMAT0024583 Bos taurus miR-2285h
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 7 ggttttc 1
>hco-miR-5917 MIMAT0023390 Haemonchus contortus miR-5917
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 7 ggttttc 1
>cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 1 ggttttc 7
>bmo-miR-3258 MIMAT0015442 Bombyx mori miR-3258
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 7 ggttttc 1
>crm-miR-81-5p MIMAT0011569 Caenorhabditis remanei miR-81-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 2 ggttttc 8
>osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 8 ggttttc 2
>gga-miR-1798-3p MIMAT0007714 Gallus gallus miR-1798-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 2 ggttttc 8
>oan-miR-1422d-3p MIMAT0007094 Ornithorhynchus anatinus
         miR-1422d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 8 ggttttc 2
>oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus
         miR-1422k-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 8 ggttttc 2
>oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus
         miR-1422c-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 8 ggttttc 2
>oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus
         miR-1422e-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 8 ggttttc 2
>cel-miR-82-5p MIMAT0020323 Caenorhabditis elegans miR-82-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 2 ggttttc 8
>cel-miR-81-5p MIMAT0015109 Caenorhabditis elegans miR-81-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggttttc 7
         |||||||
Sbjct: 2 ggttttc 8
>oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>tae-miR7757-5p MIMAT0035800 Triticum aestivum miR7757-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>rno-miR-193b-5p MIMAT0035733 Rattus norvegicus miR-193b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>hsa-miR-548bb-3p MIMAT0035704 Homo sapiens miR-548bb-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>cpa-miR8150 MIMAT0031847 Carica papaya miR8150
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>osa-miR5539b MIMAT0031377 Oryza sativa miR5539b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 8 gttttc 3
>stu-miR8030-3p MIMAT0031207 Solanum tuberosum miR8030-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>bta-miR-2285ad MIMAT0030446 Bos taurus miR-2285ad
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285ac MIMAT0030440 Bos taurus miR-2285ac
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285ab MIMAT0030436 Bos taurus miR-2285ab
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bdi-miR7735-5p MIMAT0030206 Brachypodium distachyon miR7735-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 3 gttttc 8
>bta-miR-2285u MIMAT0031094 Bos taurus miR-2285u
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>bta-miR-2285y MIMAT0029944 Bos taurus miR-2285y
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>cbr-miR-7588 MIMAT0029592 Caenorhabditis briggsae miR-7588
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>mmu-miR-7234-5p MIMAT0028436 Mus musculus miR-7234-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 3 gttttc 8
>mmu-miR-7065-3p MIMAT0028035 Mus musculus miR-7065-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>mmu-miR-6986-3p MIMAT0027875 Mus musculus miR-6986-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 1 gttttc 6
>gga-miR-6575-3p MIMAT0025658 Gallus gallus miR-6575-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 3 gttttc 8
>ptc-miR6468-5p MIMAT0027337 Populus trichocarpa miR6468-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 1 gttttc 6
>mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 1 gttttc 6
>bta-miR-2285l MIMAT0024587 Bos taurus miR-2285l
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285k MIMAT0024586 Bos taurus miR-2285k
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285i MIMAT0024584 Bos taurus miR-2285i
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bta-miR-2285f MIMAT0024581 Bos taurus miR-2285f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>cca-miR6105a MIMAT0024538 Cynara cardunculus miR6105a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 8 gttttc 3
>ggo-miR-548b MIMAT0024260 Gorilla gorilla miR-548b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>osa-miR5539a MIMAT0022175 Oryza sativa miR5539a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 8 gttttc 3
>asu-miR-5351-5p MIMAT0021560 Ascaris suum miR-5351-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>oar-miR-329a-5p MIMAT0019265 Ovis aries miR-329a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>oar-miR-329b-5p MIMAT0019263 Ovis aries miR-329b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>hsa-miR-548ad-3p MIMAT0018946 Homo sapiens miR-548ad-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 6 gttttc 1
>hsa-miR-548ac MIMAT0018938 Homo sapiens miR-548ac
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>hsa-miR-548z MIMAT0018446 Homo sapiens miR-548z
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>tca-miR-3894-5p MIMAT0018890 Tribolium castaneum miR-3894-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 1 ggtttt 6
>cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>bmo-miR-3326 MIMAT0015513 Bombyx mori miR-3326
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>cqu-bantam-5p MIMAT0014420 Culex quinquefasciatus bantam-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>aae-bantam-5p MIMAT0014218 Aedes aegypti bantam-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>osa-miR2868 MIMAT0013815 Oryza sativa miR2868
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>eca-miR-703 MIMAT0013002 Equus caballus miR-703
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>cte-miR-2721 MIMAT0013577 Capitella teleta miR-2721
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>bta-miR-2312 MIMAT0011828 Bos taurus miR-2312
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bta-miR-2301 MIMAT0011812 Bos taurus miR-2301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>sme-miR-2160-2-3p MIMAT0013776 Schmidtea mediterranea
         miR-2160-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 1 ggtttt 6
>sme-miR-2147d-5p MIMAT0011406 Schmidtea mediterranea
         miR-2147d-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 8 gttttc 3
>sme-miR-2156b-5p MIMAT0011393 Schmidtea mediterranea
         miR-2156b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>sme-miR-2147c MIMAT0011270 Schmidtea mediterranea miR-2147c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 8 gttttc 3
>sme-miR-2147b MIMAT0011265 Schmidtea mediterranea miR-2147b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 8 gttttc 3
>tca-bantam-5p MIMAT0019178 Tribolium castaneum bantam-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>dvi-bantam-5p MIMAT0032086 Drosophila virilis bantam-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>xla-miR-703 MIMAT0011148 Xenopus laevis miR-703
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>bmo-bantam-5p MIMAT0015278 Bombyx mori bantam-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>mml-miR-548d-3p MIMAT0006414 Macaca mulatta miR-548d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>mml-miR-548b MIMAT0006411 Macaca mulatta miR-548b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>mml-miR-329-2-5p MIMAT0031107 Macaca mulatta miR-329-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>mml-miR-329-1-5p MIMAT0026852 Macaca mulatta miR-329-1-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>gga-miR-1815 MIMAT0007512 Gallus gallus miR-1815
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>hsa-miR-1537-3p MIMAT0007399 Homo sapiens miR-1537-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>oan-miR-1422q-3p MIMAT0007317 Ornithorhynchus anatinus
         miR-1422q-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 6 gttttc 1
>oan-miR-1339-3p MIMAT0006862 Ornithorhynchus anatinus
         miR-1339-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 7 gttttc 2
>hsa-miR-548h-3p MIMAT0022723 Homo sapiens miR-548h-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>cel-miR-794-3p MIMAT0020352 Caenorhabditis elegans miR-794-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttttc 7
         ||||||
Sbjct: 7 gttttc 2
>sme-bantam-b-5p MIMAT0012085 Schmidtea mediterranea bantam-b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>mmu-miR-703 MIMAT0003493 Mus musculus miR-703
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 6 ggtttt 1
>hsa-miR-548d-3p MIMAT0003323 Homo sapiens miR-548d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 8 ggtttt 3
>hsa-miR-329-5p MIMAT0026555 Homo sapiens miR-329-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
>dme-bantam-5p MIMAT0020823 Drosophila melanogaster bantam-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggtttt 6
         ||||||
Sbjct: 3 ggtttt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 161
Number of extensions: 146
Number of successful extensions: 82
Number of sequences better than 100.0: 82
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 82
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)