BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv16-miR-h5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-1251-3p MIMAT0028701 Monodelphis domestica miR-1251-3p 14 27
gga-miR-6571-5p MIMAT0025649 Gallus gallus miR-6571-5p 14 27
ptc-miR6465 MIMAT0025193 Populus trichocarpa miR6465 14 27
mtr-miR5760 MIMAT0023149 Medicago truncatula miR5760 14 27
tca-miR-3881-3p MIMAT0018859 Tribolium castaneum miR-3881-3p 14 27
bmo-miR-3374-3p MIMAT0015564 Bombyx mori miR-3374-3p 14 27
dps-miR-2513a MIMAT0012298 Drosophila pseudoobscura miR-2513a 14 27
sme-miR-79-3p MIMAT0003988 Schmidtea mediterranea miR-79-3p 14 27
>mdo-miR-1251-3p MIMAT0028701 Monodelphis domestica miR-1251-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaaagc 7
|||||||
Sbjct: 8 gtaaagc 2
>gga-miR-6571-5p MIMAT0025649 Gallus gallus miR-6571-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaaagc 7
|||||||
Sbjct: 1 gtaaagc 7
>ptc-miR6465 MIMAT0025193 Populus trichocarpa miR6465
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taaagca 8
|||||||
Sbjct: 2 taaagca 8
>mtr-miR5760 MIMAT0023149 Medicago truncatula miR5760
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taaagca 8
|||||||
Sbjct: 7 taaagca 1
>tca-miR-3881-3p MIMAT0018859 Tribolium castaneum miR-3881-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taaagca 8
|||||||
Sbjct: 7 taaagca 1
>bmo-miR-3374-3p MIMAT0015564 Bombyx mori miR-3374-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taaagca 8
|||||||
Sbjct: 7 taaagca 1
>dps-miR-2513a MIMAT0012298 Drosophila pseudoobscura miR-2513a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taaagca 8
|||||||
Sbjct: 1 taaagca 7
>sme-miR-79-3p MIMAT0003988 Schmidtea mediterranea miR-79-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaaagc 7
|||||||
Sbjct: 1 gtaaagc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 184
Number of extensions: 176
Number of successful extensions: 99
Number of sequences better than 100.0: 8
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
