BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart13
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-35-3p MIMAT0016963 Rhesus lymphocryptovirus miR-rL1... 14 20
cte-miR-216c MIMAT0013570 Capitella teleta miR-216c 14 20
dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p 14 20
ebv-miR-BART13-3p MIMAT0003424 Epstein Barr miR-BART13-3p 14 20
dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p 14 20
gma-miR9727 MIMAT0036345 Glycine max miR9727 12 80
gra-miR8738b MIMAT0034151 Gossypium raimondii miR8738b 12 80
gra-miR8738a MIMAT0034150 Gossypium raimondii miR8738a 12 80
pxy-miR-9b-3p MIMAT0033808 Plutella xylostella miR-9b-3p 12 80
str-miR-8401-3p MIMAT0033497 Strongyloides ratti miR-8401-3p 12 80
str-lin-4-3p MIMAT0033337 Strongyloides ratti lin-4-3p 12 80
ppc-miR-8216-5p MIMAT0032862 Pristionchus pacificus miR-8216-5p 12 80
ppe-miR8133-3p MIMAT0031564 Prunus persica miR8133-3p 12 80
stu-miR169e-3p MIMAT0031368 Solanum tuberosum miR169e-3p 12 80
stu-miR7993b-5p MIMAT0031187 Solanum tuberosum miR7993b-5p 12 80
mdo-miR-7298-5p MIMAT0028584 Monodelphis domestica miR-7298-5p 12 80
bma-miR-5865 MIMAT0026364 Brugia malayi miR-5865 12 80
mmu-miR-7062-3p MIMAT0028029 Mus musculus miR-7062-3p 12 80
mmu-miR-6374 MIMAT0025118 Mus musculus miR-6374 12 80
hme-miR-9a MIMAT0025003 Heliconius melpomene miR-9a 12 80
hme-miR-2765 MIMAT0024956 Heliconius melpomene miR-2765 12 80
mse-miR-9a MIMAT0024473 Manduca sexta miR-9a 12 80
mse-miR-2765 MIMAT0024470 Manduca sexta miR-2765 12 80
ame-miR-2765-5p MIMAT0023551 Apis mellifera miR-2765-5p 12 80
hsa-miR-548at-5p MIMAT0022277 Homo sapiens miR-548at-5p 12 80
aca-miR-216b-3p MIMAT0021877 Anolis carolinensis miR-216b-3p 12 80
dme-miR-4944-3p MIMAT0020154 Drosophila melanogaster miR-4944-3p 12 80
sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824 12 80
hsa-miR-4670-3p MIMAT0019751 Homo sapiens miR-4670-3p 12 80
tca-miR-2765-5p MIMAT0018630 Tribolium castaneum miR-2765-5p 12 80
ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600 12 80
bmo-miR-3377-5p MIMAT0015567 Bombyx mori miR-3377-5p 12 80
bmo-miR-3297-3p MIMAT0015486 Bombyx mori miR-3297-3p 12 80
api-miR-2765 MIMAT0014787 Acyrthosiphon pisum miR-2765 12 80
tgu-miR-1451-3p MIMAT0026958 Taeniopygia guttata miR-1451-3p 12 80
aae-miR-2765 MIMAT0014285 Aedes aegypti miR-2765 12 80
rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus miR-rL1... 12 80
ssc-miR-935 MIMAT0013947 Sus scrofa miR-935 12 80
rno-miR-935 MIMAT0012845 Rattus norvegicus miR-935 12 80
bmo-miR-2765 MIMAT0013640 Bombyx mori miR-2765 12 80
bmo-miR-9c-3p MIMAT0012621 Bombyx mori miR-9c-3p 12 80
dps-miR-2523 MIMAT0012311 Drosophila pseudoobscura miR-2523 12 80
dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p 12 80
dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster miR-2489-5p 12 80
sme-miR-2201-5p MIMAT0011423 Schmidtea mediterranea miR-2201-5p 12 80
sbi-miR821b MIMAT0011386 Sorghum bicolor miR821b 12 80
sme-miR-2163-5p MIMAT0012154 Schmidtea mediterranea miR-2163-5p 12 80
nve-miR-2032b-3p MIMAT0009787 Nematostella vectensis miR-2032b-3p 12 80
nve-miR-2032a-3p MIMAT0009785 Nematostella vectensis miR-2032a-3p 12 80
bta-miR-935 MIMAT0009385 Bos taurus miR-935 12 80
ptr-miR-935 MIMAT0008342 Pan troglodytes miR-935 12 80
ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a 12 80
mml-miR-600 MIMAT0006457 Macaca mulatta miR-600 12 80
gga-miR-1559-3p MIMAT0026775 Gallus gallus miR-1559-3p 12 80
mdv1-miR-M11-3p MIMAT0005983 Mareks disease miR-M11-3p 12 80
oan-miR-1418-5p MIMAT0007276 Ornithorhynchus anatinus miR-1418-5p 12 80
dme-miR-974-3p MIMAT0020871 Drosophila melanogaster miR-974-3p 12 80
hsa-miR-935 MIMAT0004978 Homo sapiens miR-935 12 80
>rlcv-miR-rL1-35-3p MIMAT0016963 Rhesus lymphocryptovirus
miR-rL1-35-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>cte-miR-216c MIMAT0013570 Capitella teleta miR-216c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaactt 7
|||||||
Sbjct: 8 gtaactt 2
>dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 1 gtaactt 7
>ebv-miR-BART13-3p MIMAT0003424 Epstein Barr miR-BART13-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 1 gtaactt 7
>gma-miR9727 MIMAT0036345 Glycine max miR9727
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>gra-miR8738b MIMAT0034151 Gossypium raimondii miR8738b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 3 taactt 8
>gra-miR8738a MIMAT0034150 Gossypium raimondii miR8738a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 3 taactt 8
>pxy-miR-9b-3p MIMAT0033808 Plutella xylostella miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>str-miR-8401-3p MIMAT0033497 Strongyloides ratti miR-8401-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 3 taactt 8
>str-lin-4-3p MIMAT0033337 Strongyloides ratti lin-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>ppc-miR-8216-5p MIMAT0032862 Pristionchus pacificus miR-8216-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>ppe-miR8133-3p MIMAT0031564 Prunus persica miR8133-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>stu-miR169e-3p MIMAT0031368 Solanum tuberosum miR169e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>stu-miR7993b-5p MIMAT0031187 Solanum tuberosum miR7993b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>mdo-miR-7298-5p MIMAT0028584 Monodelphis domestica miR-7298-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>bma-miR-5865 MIMAT0026364 Brugia malayi miR-5865
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 3 taactt 8
>mmu-miR-7062-3p MIMAT0028029 Mus musculus miR-7062-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 3 taactt 8
>mmu-miR-6374 MIMAT0025118 Mus musculus miR-6374
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 6 taactt 1
>hme-miR-9a MIMAT0025003 Heliconius melpomene miR-9a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>hme-miR-2765 MIMAT0024956 Heliconius melpomene miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>mse-miR-9a MIMAT0024473 Manduca sexta miR-9a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>mse-miR-2765 MIMAT0024470 Manduca sexta miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>ame-miR-2765-5p MIMAT0023551 Apis mellifera miR-2765-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>hsa-miR-548at-5p MIMAT0022277 Homo sapiens miR-548at-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>aca-miR-216b-3p MIMAT0021877 Anolis carolinensis miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>dme-miR-4944-3p MIMAT0020154 Drosophila melanogaster
miR-4944-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>hsa-miR-4670-3p MIMAT0019751 Homo sapiens miR-4670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>tca-miR-2765-5p MIMAT0018630 Tribolium castaneum miR-2765-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>ppy-miR-600 MIMAT0016042 Pongo pygmaeus miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 6 gtaact 1
>bmo-miR-3377-5p MIMAT0015567 Bombyx mori miR-3377-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>bmo-miR-3297-3p MIMAT0015486 Bombyx mori miR-3297-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>api-miR-2765 MIMAT0014787 Acyrthosiphon pisum miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>tgu-miR-1451-3p MIMAT0026958 Taeniopygia guttata miR-1451-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>aae-miR-2765 MIMAT0014285 Aedes aegypti miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus
miR-rL1-32-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>ssc-miR-935 MIMAT0013947 Sus scrofa miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>rno-miR-935 MIMAT0012845 Rattus norvegicus miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>bmo-miR-2765 MIMAT0013640 Bombyx mori miR-2765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>bmo-miR-9c-3p MIMAT0012621 Bombyx mori miR-9c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>dps-miR-2523 MIMAT0012311 Drosophila pseudoobscura miR-2523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 7 taactt 2
>dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster
miR-2489-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 7 taactt 2
>sme-miR-2201-5p MIMAT0011423 Schmidtea mediterranea miR-2201-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 6 gtaact 1
>sbi-miR821b MIMAT0011386 Sorghum bicolor miR821b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 6 taactt 1
>sme-miR-2163-5p MIMAT0012154 Schmidtea mediterranea miR-2163-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>nve-miR-2032b-3p MIMAT0009787 Nematostella vectensis
miR-2032b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>nve-miR-2032a-3p MIMAT0009785 Nematostella vectensis
miR-2032a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaact 6
||||||
Sbjct: 3 gtaact 8
>bta-miR-935 MIMAT0009385 Bos taurus miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>ptr-miR-935 MIMAT0008342 Pan troglodytes miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 7 taactt 2
>mml-miR-600 MIMAT0006457 Macaca mulatta miR-600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 6 gtaact 1
>gga-miR-1559-3p MIMAT0026775 Gallus gallus miR-1559-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 6 gtaact 1
>mdv1-miR-M11-3p MIMAT0005983 Mareks disease miR-M11-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
>oan-miR-1418-5p MIMAT0007276 Ornithorhynchus anatinus
miR-1418-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>dme-miR-974-3p MIMAT0020871 Drosophila melanogaster miR-974-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 3 taactt 8
>hsa-miR-935 MIMAT0004978 Homo sapiens miR-935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 94
Number of extensions: 89
Number of successful extensions: 58
Number of sequences better than 100.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
