BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rcmv-miR-r1-1
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ata-miR9674a-3p MIMAT0037205 Aegilops tauschii miR9674a-3p             16   6.9  
ssa-miR-200b-5p MIMAT0032479 Salmo salar miR-200b-5p                   16   6.9  
ssa-miR-200a-3-5p MIMAT0032478 Salmo salar miR-200a-3-5p               16   6.9  
ssa-miR-200a-2-5p MIMAT0032477 Salmo salar miR-200a-2-5p               16   6.9  
ssa-miR-200a-1-5p MIMAT0032475 Salmo salar miR-200a-1-5p               16   6.9  
prd-miR-7940b-5p MIMAT0030556 Panagrellus redivivus miR-7940b-5p       16   6.9  
sma-miR-8-5p MIMAT0025045 Schistosoma mansoni miR-8-5p                 16   6.9  
aca-miR-200b-5p MIMAT0021846 Anolis carolinensis miR-200b-5p           16   6.9  
aca-miR-200a-5p MIMAT0021844 Anolis carolinensis miR-200a-5p           16   6.9  
pma-miR-200b-5p MIMAT0019509 Petromyzon marinus miR-200b-5p            16   6.9  
sja-miR-8-5p MIMAT0016251 Schistosoma japonicum miR-8-5p               16   6.9  
tgu-miR-200a-5p MIMAT0014640 Taeniopygia guttata miR-200a-5p           16   6.9  
cqu-miR-8-5p MIMAT0014408 Culex quinquefasciatus miR-8-5p              16   6.9  
aae-miR-8-5p MIMAT0014214 Aedes aegypti miR-8-5p                       16   6.9  
lmi-miR-8-5p MIMAT0010148 Locusta migratoria miR-8-5p                  16   6.9  
cfa-miR-200a MIMAT0009865 Canis familiaris miR-200a                    16   6.9  
cfa-miR-200b MIMAT0009864 Canis familiaris miR-200b                    16   6.9  
dvi-miR-8-5p MIMAT0032077 Drosophila virilis miR-8-5p                  16   6.9  
tca-miR-8-5p MIMAT0019100 Tribolium castaneum miR-8-5p                 16   6.9  
mml-miR-200a-5p MIMAT0026842 Macaca mulatta miR-200a-5p                16   6.9  
oan-miR-200b-5p MIMAT0006937 Ornithorhynchus anatinus miR-200b-5p      16   6.9  
oan-miR-200a-5p MIMAT0006935 Ornithorhynchus anatinus miR-200a-5p      16   6.9  
mdo-miR-200a-5p MIMAT0004157 Monodelphis domestica miR-200a-5p         16   6.9  
mdo-miR-200c-5p MIMAT0026694 Monodelphis domestica miR-200c-5p         16   6.9  
bmo-miR-8-5p MIMAT0015224 Bombyx mori miR-8-5p                         16   6.9  
dre-miR-200c-5p MIMAT0031986 Danio rerio miR-200c-5p                   16   6.9  
dre-miR-200b-5p MIMAT0031985 Danio rerio miR-200b-5p                   16   6.9  
dre-miR-200a-5p MIMAT0031984 Danio rerio miR-200a-5p                   16   6.9  
dre-miR-141-5p MIMAT0031974 Danio rerio miR-141-5p                     16   6.9  
gga-miR-200a-5p MIMAT0026533 Gallus gallus miR-200a-5p                 16   6.9  
rno-miR-200b-5p MIMAT0017152 Rattus norvegicus miR-200b-5p             16   6.9  
rno-miR-200a-5p MIMAT0017151 Rattus norvegicus miR-200a-5p             16   6.9  
hsa-miR-200a-5p MIMAT0001620 Homo sapiens miR-200a-5p                  16   6.9  
mmu-miR-200a-5p MIMAT0004619 Mus musculus miR-200a-5p                  16   6.9  
hsa-miR-200b-5p MIMAT0004571 Homo sapiens miR-200b-5p                  16   6.9  
mmu-miR-200b-5p MIMAT0004545 Mus musculus miR-200b-5p                  16   6.9  
dme-miR-8-5p MIMAT0020791 Drosophila melanogaster miR-8-5p             16   6.9  
atr-miR8574 MIMAT0033857 Amborella trichopoda miR8574                  14      27
sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p           14      27
bbe-miR-200a-3p MIMAT0031606 Branchiostoma belcheri miR-200a-3p        14      27
prd-miR-7943-5p MIMAT0030746 Panagrellus redivivus miR-7943-5p         14      27
mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p         14      27
cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p        14      27
aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p                14      27
tgu-miR-200b-5p MIMAT0014649 Taeniopygia guttata miR-200b-5p           14      27
mmu-miR-1941-3p MIMAT0009406 Mus musculus miR-1941-3p                  14      27
mdo-miR-200b-5p MIMAT0026700 Monodelphis domestica miR-200b-5p         14      27
>ata-miR9674a-3p MIMAT0037205 Aegilops tauschii miR9674a-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 1 gtaagatg 8
>ssa-miR-200b-5p MIMAT0032479 Salmo salar miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>ssa-miR-200a-3-5p MIMAT0032478 Salmo salar miR-200a-3-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>ssa-miR-200a-2-5p MIMAT0032477 Salmo salar miR-200a-2-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>ssa-miR-200a-1-5p MIMAT0032475 Salmo salar miR-200a-1-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>prd-miR-7940b-5p MIMAT0030556 Panagrellus redivivus
         miR-7940b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 1 gtaagatg 8
>sma-miR-8-5p MIMAT0025045 Schistosoma mansoni miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>aca-miR-200b-5p MIMAT0021846 Anolis carolinensis miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>aca-miR-200a-5p MIMAT0021844 Anolis carolinensis miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>pma-miR-200b-5p MIMAT0019509 Petromyzon marinus miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>sja-miR-8-5p MIMAT0016251 Schistosoma japonicum miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>tgu-miR-200a-5p MIMAT0014640 Taeniopygia guttata miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>cqu-miR-8-5p MIMAT0014408 Culex quinquefasciatus miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>aae-miR-8-5p MIMAT0014214 Aedes aegypti miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>lmi-miR-8-5p MIMAT0010148 Locusta migratoria miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>cfa-miR-200a MIMAT0009865 Canis familiaris miR-200a
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>cfa-miR-200b MIMAT0009864 Canis familiaris miR-200b
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>dvi-miR-8-5p MIMAT0032077 Drosophila virilis miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>tca-miR-8-5p MIMAT0019100 Tribolium castaneum miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>mml-miR-200a-5p MIMAT0026842 Macaca mulatta miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>oan-miR-200b-5p MIMAT0006937 Ornithorhynchus anatinus
         miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>oan-miR-200a-5p MIMAT0006935 Ornithorhynchus anatinus
         miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>mdo-miR-200a-5p MIMAT0004157 Monodelphis domestica miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>mdo-miR-200c-5p MIMAT0026694 Monodelphis domestica miR-200c-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>bmo-miR-8-5p MIMAT0015224 Bombyx mori miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-200c-5p MIMAT0031986 Danio rerio miR-200c-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-200b-5p MIMAT0031985 Danio rerio miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-200a-5p MIMAT0031984 Danio rerio miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-141-5p MIMAT0031974 Danio rerio miR-141-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>gga-miR-200a-5p MIMAT0026533 Gallus gallus miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>rno-miR-200b-5p MIMAT0017152 Rattus norvegicus miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>rno-miR-200a-5p MIMAT0017151 Rattus norvegicus miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>hsa-miR-200a-5p MIMAT0001620 Homo sapiens miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>mmu-miR-200a-5p MIMAT0004619 Mus musculus miR-200a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>hsa-miR-200b-5p MIMAT0004571 Homo sapiens miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>mmu-miR-200b-5p MIMAT0004545 Mus musculus miR-200b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>dme-miR-8-5p MIMAT0020791 Drosophila melanogaster miR-8-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtaagatg 8
         ||||||||
Sbjct: 8 gtaagatg 1
>atr-miR8574 MIMAT0033857 Amborella trichopoda miR8574
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 taagatg 8
         |||||||
Sbjct: 8 taagatg 2
>sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taagatg 8
         |||||||
Sbjct: 1 taagatg 7
>bbe-miR-200a-3p MIMAT0031606 Branchiostoma belcheri miR-200a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtaagat 7
         |||||||
Sbjct: 7 gtaagat 1
>prd-miR-7943-5p MIMAT0030746 Panagrellus redivivus miR-7943-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtaagat 7
         |||||||
Sbjct: 7 gtaagat 1
>mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 taagatg 8
         |||||||
Sbjct: 1 taagatg 7
>cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtaagat 7
         |||||||
Sbjct: 1 gtaagat 7
>aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 taagatg 8
         |||||||
Sbjct: 8 taagatg 2
>tgu-miR-200b-5p MIMAT0014649 Taeniopygia guttata miR-200b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtaagat 7
         |||||||
Sbjct: 7 gtaagat 1
>mmu-miR-1941-3p MIMAT0009406 Mus musculus miR-1941-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 taagatg 8
         |||||||
Sbjct: 7 taagatg 1
>mdo-miR-200b-5p MIMAT0026700 Monodelphis domestica miR-200b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtaagat 7
         |||||||
Sbjct: 7 gtaagat 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 224
Number of extensions: 140
Number of successful extensions: 120
Number of sequences better than 100.0: 47
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 47
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)