BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r1-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR9674a-3p MIMAT0037205 Aegilops tauschii miR9674a-3p 16 6.9
ssa-miR-200b-5p MIMAT0032479 Salmo salar miR-200b-5p 16 6.9
ssa-miR-200a-3-5p MIMAT0032478 Salmo salar miR-200a-3-5p 16 6.9
ssa-miR-200a-2-5p MIMAT0032477 Salmo salar miR-200a-2-5p 16 6.9
ssa-miR-200a-1-5p MIMAT0032475 Salmo salar miR-200a-1-5p 16 6.9
prd-miR-7940b-5p MIMAT0030556 Panagrellus redivivus miR-7940b-5p 16 6.9
sma-miR-8-5p MIMAT0025045 Schistosoma mansoni miR-8-5p 16 6.9
aca-miR-200b-5p MIMAT0021846 Anolis carolinensis miR-200b-5p 16 6.9
aca-miR-200a-5p MIMAT0021844 Anolis carolinensis miR-200a-5p 16 6.9
pma-miR-200b-5p MIMAT0019509 Petromyzon marinus miR-200b-5p 16 6.9
sja-miR-8-5p MIMAT0016251 Schistosoma japonicum miR-8-5p 16 6.9
tgu-miR-200a-5p MIMAT0014640 Taeniopygia guttata miR-200a-5p 16 6.9
cqu-miR-8-5p MIMAT0014408 Culex quinquefasciatus miR-8-5p 16 6.9
aae-miR-8-5p MIMAT0014214 Aedes aegypti miR-8-5p 16 6.9
lmi-miR-8-5p MIMAT0010148 Locusta migratoria miR-8-5p 16 6.9
cfa-miR-200a MIMAT0009865 Canis familiaris miR-200a 16 6.9
cfa-miR-200b MIMAT0009864 Canis familiaris miR-200b 16 6.9
dvi-miR-8-5p MIMAT0032077 Drosophila virilis miR-8-5p 16 6.9
tca-miR-8-5p MIMAT0019100 Tribolium castaneum miR-8-5p 16 6.9
mml-miR-200a-5p MIMAT0026842 Macaca mulatta miR-200a-5p 16 6.9
oan-miR-200b-5p MIMAT0006937 Ornithorhynchus anatinus miR-200b-5p 16 6.9
oan-miR-200a-5p MIMAT0006935 Ornithorhynchus anatinus miR-200a-5p 16 6.9
mdo-miR-200a-5p MIMAT0004157 Monodelphis domestica miR-200a-5p 16 6.9
mdo-miR-200c-5p MIMAT0026694 Monodelphis domestica miR-200c-5p 16 6.9
bmo-miR-8-5p MIMAT0015224 Bombyx mori miR-8-5p 16 6.9
dre-miR-200c-5p MIMAT0031986 Danio rerio miR-200c-5p 16 6.9
dre-miR-200b-5p MIMAT0031985 Danio rerio miR-200b-5p 16 6.9
dre-miR-200a-5p MIMAT0031984 Danio rerio miR-200a-5p 16 6.9
dre-miR-141-5p MIMAT0031974 Danio rerio miR-141-5p 16 6.9
gga-miR-200a-5p MIMAT0026533 Gallus gallus miR-200a-5p 16 6.9
rno-miR-200b-5p MIMAT0017152 Rattus norvegicus miR-200b-5p 16 6.9
rno-miR-200a-5p MIMAT0017151 Rattus norvegicus miR-200a-5p 16 6.9
hsa-miR-200a-5p MIMAT0001620 Homo sapiens miR-200a-5p 16 6.9
mmu-miR-200a-5p MIMAT0004619 Mus musculus miR-200a-5p 16 6.9
hsa-miR-200b-5p MIMAT0004571 Homo sapiens miR-200b-5p 16 6.9
mmu-miR-200b-5p MIMAT0004545 Mus musculus miR-200b-5p 16 6.9
dme-miR-8-5p MIMAT0020791 Drosophila melanogaster miR-8-5p 16 6.9
atr-miR8574 MIMAT0033857 Amborella trichopoda miR8574 14 27
sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p 14 27
bbe-miR-200a-3p MIMAT0031606 Branchiostoma belcheri miR-200a-3p 14 27
prd-miR-7943-5p MIMAT0030746 Panagrellus redivivus miR-7943-5p 14 27
mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p 14 27
cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p 14 27
aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p 14 27
tgu-miR-200b-5p MIMAT0014649 Taeniopygia guttata miR-200b-5p 14 27
mmu-miR-1941-3p MIMAT0009406 Mus musculus miR-1941-3p 14 27
mdo-miR-200b-5p MIMAT0026700 Monodelphis domestica miR-200b-5p 14 27
>ata-miR9674a-3p MIMAT0037205 Aegilops tauschii miR9674a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtaagatg 8
||||||||
Sbjct: 1 gtaagatg 8
>ssa-miR-200b-5p MIMAT0032479 Salmo salar miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>ssa-miR-200a-3-5p MIMAT0032478 Salmo salar miR-200a-3-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>ssa-miR-200a-2-5p MIMAT0032477 Salmo salar miR-200a-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>ssa-miR-200a-1-5p MIMAT0032475 Salmo salar miR-200a-1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>prd-miR-7940b-5p MIMAT0030556 Panagrellus redivivus
miR-7940b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtaagatg 8
||||||||
Sbjct: 1 gtaagatg 8
>sma-miR-8-5p MIMAT0025045 Schistosoma mansoni miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>aca-miR-200b-5p MIMAT0021846 Anolis carolinensis miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>aca-miR-200a-5p MIMAT0021844 Anolis carolinensis miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>pma-miR-200b-5p MIMAT0019509 Petromyzon marinus miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>sja-miR-8-5p MIMAT0016251 Schistosoma japonicum miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>tgu-miR-200a-5p MIMAT0014640 Taeniopygia guttata miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>cqu-miR-8-5p MIMAT0014408 Culex quinquefasciatus miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>aae-miR-8-5p MIMAT0014214 Aedes aegypti miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>lmi-miR-8-5p MIMAT0010148 Locusta migratoria miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>cfa-miR-200a MIMAT0009865 Canis familiaris miR-200a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>cfa-miR-200b MIMAT0009864 Canis familiaris miR-200b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>dvi-miR-8-5p MIMAT0032077 Drosophila virilis miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>tca-miR-8-5p MIMAT0019100 Tribolium castaneum miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>mml-miR-200a-5p MIMAT0026842 Macaca mulatta miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>oan-miR-200b-5p MIMAT0006937 Ornithorhynchus anatinus
miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>oan-miR-200a-5p MIMAT0006935 Ornithorhynchus anatinus
miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>mdo-miR-200a-5p MIMAT0004157 Monodelphis domestica miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>mdo-miR-200c-5p MIMAT0026694 Monodelphis domestica miR-200c-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>bmo-miR-8-5p MIMAT0015224 Bombyx mori miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-200c-5p MIMAT0031986 Danio rerio miR-200c-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-200b-5p MIMAT0031985 Danio rerio miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-200a-5p MIMAT0031984 Danio rerio miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>dre-miR-141-5p MIMAT0031974 Danio rerio miR-141-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>gga-miR-200a-5p MIMAT0026533 Gallus gallus miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>rno-miR-200b-5p MIMAT0017152 Rattus norvegicus miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>rno-miR-200a-5p MIMAT0017151 Rattus norvegicus miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>hsa-miR-200a-5p MIMAT0001620 Homo sapiens miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>mmu-miR-200a-5p MIMAT0004619 Mus musculus miR-200a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>hsa-miR-200b-5p MIMAT0004571 Homo sapiens miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>mmu-miR-200b-5p MIMAT0004545 Mus musculus miR-200b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>dme-miR-8-5p MIMAT0020791 Drosophila melanogaster miR-8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtaagatg 8
||||||||
Sbjct: 8 gtaagatg 1
>atr-miR8574 MIMAT0033857 Amborella trichopoda miR8574
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taagatg 8
|||||||
Sbjct: 8 taagatg 2
>sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taagatg 8
|||||||
Sbjct: 1 taagatg 7
>bbe-miR-200a-3p MIMAT0031606 Branchiostoma belcheri miR-200a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaagat 7
|||||||
Sbjct: 7 gtaagat 1
>prd-miR-7943-5p MIMAT0030746 Panagrellus redivivus miR-7943-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaagat 7
|||||||
Sbjct: 7 gtaagat 1
>mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taagatg 8
|||||||
Sbjct: 1 taagatg 7
>cel-miR-4808-5p MIMAT0019991 Caenorhabditis elegans miR-4808-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaagat 7
|||||||
Sbjct: 1 gtaagat 7
>aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taagatg 8
|||||||
Sbjct: 8 taagatg 2
>tgu-miR-200b-5p MIMAT0014649 Taeniopygia guttata miR-200b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaagat 7
|||||||
Sbjct: 7 gtaagat 1
>mmu-miR-1941-3p MIMAT0009406 Mus musculus miR-1941-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taagatg 8
|||||||
Sbjct: 7 taagatg 1
>mdo-miR-200b-5p MIMAT0026700 Monodelphis domestica miR-200b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaagat 7
|||||||
Sbjct: 7 gtaagat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 224
Number of extensions: 140
Number of successful extensions: 120
Number of sequences better than 100.0: 47
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 47
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)