BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-6-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prv-miR-LLT6 MIMAT0025309 Pseudorabies virus miR-LLT6 14 20
mcmv-miR-M23-1-5p MIMAT0005542 Mouse cytomegalovirus miR-M23-1-5p 14 20
ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879 12 80
chi-miR-126-3p MIMAT0035928 Capra hircus miR-126-3p 12 80
str-miR-7880m-5p MIMAT0033364 Strongyloides ratti miR-7880m-5p 12 80
ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p 12 80
ssa-miR-126-3p MIMAT0032312 Salmo salar miR-126-3p 12 80
ssa-let-7c-2-3p MIMAT0032267 Salmo salar let-7c-2-3p 12 80
hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088 12 80
prd-miR-7870-5p MIMAT0030484 Panagrellus redivivus miR-7870-5p 12 80
cbr-miR-7591 MIMAT0029597 Caenorhabditis briggsae miR-7591 12 80
ipu-miR-126a MIMAT0029400 Ictalurus punctatus miR-126a 12 80
ppy-miR-4798 MIMAT0024374 Pongo pygmaeus miR-4798 12 80
cgr-miR-126 MIMAT0023745 Cricetulus griseus miR-126 12 80
sha-miR-126 MIMAT0022779 Sarcophilus harrisii miR-126 12 80
ola-miR-126-3p MIMAT0022603 Oryzias latipes miR-126-3p 12 80
aca-miR-126-3p MIMAT0021731 Anolis carolinensis miR-126-3p 12 80
hsa-miR-4798-5p MIMAT0019974 Homo sapiens miR-4798-5p 12 80
pma-miR-126 MIMAT0019448 Petromyzon marinus miR-126 12 80
ssc-miR-126-3p MIMAT0018378 Sus scrofa miR-126-3p 12 80
ame-miR-3715 MIMAT0018597 Apis mellifera miR-3715 12 80
ppy-miR-126 MIMAT0015750 Pongo pygmaeus miR-126 12 80
bmo-miR-3411 MIMAT0015617 Bombyx mori miR-3411 12 80
bmo-miR-3360 MIMAT0015546 Bombyx mori miR-3360 12 80
tgu-miR-126-3p MIMAT0014544 Taeniopygia guttata miR-126-3p 12 80
aae-miR-92a-5p MIMAT0015369 Aedes aegypti miR-92a-5p 12 80
eca-miR-126-3p MIMAT0013177 Equus caballus miR-126-3p 12 80
mdo-miR-126-3p MIMAT0026935 Monodelphis domestica miR-126-3p 12 80
mtr-miR2627 MIMAT0013348 Medicago truncatula miR2627 12 80
dre-miR-126b-3p MIMAT0011306 Danio rerio miR-126b-3p 12 80
sme-miR-2158-3p MIMAT0012149 Schmidtea mediterranea miR-2158-3p 12 80
ptr-miR-126 MIMAT0007985 Pan troglodytes miR-126 12 80
mml-miR-126 MIMAT0006183 Macaca mulatta miR-126 12 80
csa-miR-126 MIMAT0006127 Ciona savignyi miR-126 12 80
cin-miR-126-3p MIMAT0006101 Ciona intestinalis miR-126-3p 12 80
oan-miR-126-3p MIMAT0007126 Ornithorhynchus anatinus miR-126-3p 12 80
tae-miR1131 MIMAT0005366 Triticum aestivum miR1131 12 80
tae-miR1117 MIMAT0005352 Triticum aestivum miR1117 12 80
xtr-miR-126-3p MIMAT0003588 Xenopus tropicalis miR-126-3p 12 80
tni-miR-126 MIMAT0002958 Tetraodon nigroviridis miR-126 12 80
fru-miR-126 MIMAT0002957 Fugu rubripes miR-126 12 80
dre-miR-126a-3p MIMAT0001823 Danio rerio miR-126a-3p 12 80
gga-miR-126-3p MIMAT0001169 Gallus gallus miR-126-3p 12 80
rno-miR-126a-3p MIMAT0000832 Rattus norvegicus miR-126a-3p 12 80
hsa-miR-126-3p MIMAT0000445 Homo sapiens miR-126-3p 12 80
cel-miR-243-3p MIMAT0000299 Caenorhabditis elegans miR-243-3p 12 80
mmu-miR-126a-3p MIMAT0000138 Mus musculus miR-126a-3p 12 80
>prv-miR-LLT6 MIMAT0025309 Pseudorabies virus miR-LLT6
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaccga 7
|||||||
Sbjct: 2 gtaccga 8
>mcmv-miR-M23-1-5p MIMAT0005542 Mouse cytomegalovirus
miR-M23-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtaccga 7
|||||||
Sbjct: 8 gtaccga 2
>ame-miR-9879 MIMAT0037283 Apis mellifera miR-9879
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 1 gtaccg 6
>chi-miR-126-3p MIMAT0035928 Capra hircus miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>str-miR-7880m-5p MIMAT0033364 Strongyloides ratti miR-7880m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 8 taccga 3
>ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taccga 7
||||||
Sbjct: 1 taccga 6
>ssa-miR-126-3p MIMAT0032312 Salmo salar miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>ssa-let-7c-2-3p MIMAT0032267 Salmo salar let-7c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaccg 6
||||||
Sbjct: 6 gtaccg 1
>hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 8 taccga 3
>prd-miR-7870-5p MIMAT0030484 Panagrellus redivivus miR-7870-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaccg 6
||||||
Sbjct: 6 gtaccg 1
>cbr-miR-7591 MIMAT0029597 Caenorhabditis briggsae miR-7591
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 8 taccga 3
>ipu-miR-126a MIMAT0029400 Ictalurus punctatus miR-126a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>ppy-miR-4798 MIMAT0024374 Pongo pygmaeus miR-4798
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 7 taccga 2
>cgr-miR-126 MIMAT0023745 Cricetulus griseus miR-126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>sha-miR-126 MIMAT0022779 Sarcophilus harrisii miR-126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>ola-miR-126-3p MIMAT0022603 Oryzias latipes miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>aca-miR-126-3p MIMAT0021731 Anolis carolinensis miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>hsa-miR-4798-5p MIMAT0019974 Homo sapiens miR-4798-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 7 taccga 2
>pma-miR-126 MIMAT0019448 Petromyzon marinus miR-126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>ssc-miR-126-3p MIMAT0018378 Sus scrofa miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>ame-miR-3715 MIMAT0018597 Apis mellifera miR-3715
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 6 taccga 1
>ppy-miR-126 MIMAT0015750 Pongo pygmaeus miR-126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>bmo-miR-3411 MIMAT0015617 Bombyx mori miR-3411
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 6 taccga 1
>bmo-miR-3360 MIMAT0015546 Bombyx mori miR-3360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 8 taccga 3
>tgu-miR-126-3p MIMAT0014544 Taeniopygia guttata miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>aae-miR-92a-5p MIMAT0015369 Aedes aegypti miR-92a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaccg 6
||||||
Sbjct: 6 gtaccg 1
>eca-miR-126-3p MIMAT0013177 Equus caballus miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>mdo-miR-126-3p MIMAT0026935 Monodelphis domestica miR-126-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>mtr-miR2627 MIMAT0013348 Medicago truncatula miR2627
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taccga 7
||||||
Sbjct: 8 taccga 3
>dre-miR-126b-3p MIMAT0011306 Danio rerio miR-126b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtaccg 6
||||||
Sbjct: 3 gtaccg 8
>sme-miR-2158-3p MIMAT0012149 Schmidtea mediterranea miR-2158-3p
Length = 8
Score = 12.4 bits
