BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv1-miR-h4
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsv1-miR-H4-5p MIMAT0008401 Herpes Simplex miR-H4-5p                   14      20
mmu-miR-676-5p MIMAT0003781 Mus musculus miR-676-5p                    14      20
chi-miR-877-5p MIMAT0036300 Capra hircus miR-877-5p                    12      80
gsa-let-7-3p MIMAT0035261 Gyrodactylus salaris let-7-3p                12      80
ppc-miR-8341-5p MIMAT0033227 Pristionchus pacificus miR-8341-5p        12      80
cel-miR-8195-3p MIMAT0032804 Caenorhabditis elegans miR-8195-3p        12      80
bbe-miR-4865-3p MIMAT0031688 Branchiostoma belcheri miR-4865-3p        12      80
stu-miR8026 MIMAT0030927 Solanum tuberosum miR8026                     12      80
stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c                   12      80
stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p             12      80
stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p             12      80
stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a                   12      80
mdo-miR-1251-5p MIMAT0028700 Monodelphis domestica miR-1251-5p         12      80
mdo-miR-7331-2-3p MIMAT0031091 Monodelphis domestica miR-7331-2-3p     12      80
mml-miR-1251-5p MIMAT0028242 Macaca mulatta miR-1251-5p                12      80
sbi-miR437x-5p MIMAT0026406 Sorghum bicolor miR437x-5p                 12      80
mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p                  12      80
ddi-miR-7097 MIMAT0028100 Dictyostelium discoideum miR-7097            12      80
rno-miR-3102 MIMAT0025051 Rattus norvegicus miR-3102                   12      80
ppy-miR-4451 MIMAT0024362 Pongo pygmaeus miR-4451                      12      80
ggo-miR-877 MIMAT0024155 Gorilla gorilla miR-877                       12      80
bra-miR5714 MIMAT0023011 Brassica rapa miR5714                         12      80
ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b                  12      80
mmu-miR-5108 MIMAT0020616 Mus musculus miR-5108                        12      80
hsa-miR-5007-5p MIMAT0021035 Homo sapiens miR-5007-5p                  12      80
hsa-miR-4684-5p MIMAT0019769 Homo sapiens miR-4684-5p                  12      80
hsa-miR-4451 MIMAT0018973 Homo sapiens miR-4451                        12      80
csi-miR3946 MIMAT0018449 Citrus sinensis miR3946                       12      80
gma-miR4379 MIMAT0018285 Glycine max miR4379                           12      80
ppy-miR-1251 MIMAT0016176 Pongo pygmaeus miR-1251                      12      80
ppy-miR-877 MIMAT0016117 Pongo pygmaeus miR-877                        12      80
ppy-miR-618 MIMAT0016060 Pongo pygmaeus miR-618                        12      80
aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p                12      80
mmu-miR-3102-3p.2-3p MIMAT0014935 Mus musculus miR-3102-3p.2-3p        12      80
mmu-miR-1251-5p MIMAT0014824 Mus musculus miR-1251-5p                  12      80
eca-miR-1461 MIMAT0013071 Equus caballus miR-1461                      12      80
bta-miR-1251 MIMAT0009963 Bos taurus miR-1251                          12      80
bta-miR-877 MIMAT0009381 Bos taurus miR-877                            12      80
dvi-miR-282-5p MIMAT0008932 Drosophila virilis miR-282-5p              12      80
ptr-miR-618 MIMAT0008280 Pan troglodytes miR-618                       12      80
ptr-miR-1251 MIMAT0007977 Pan troglodytes miR-1251                     12      80
mml-miR-877-5p MIMAT0006521 Macaca mulatta miR-877-5p                  12      80
mml-miR-618 MIMAT0006468 Macaca mulatta miR-618                        12      80
gga-miR-216c MIMAT0007339 Gallus gallus miR-216c                       12      80
hsa-miR-1251-5p MIMAT0005903 Homo sapiens miR-1251-5p                  12      80
rno-miR-877 MIMAT0005285 Rattus norvegicus miR-877                     12      80
ppt-miR1053-3p MIMAT0005171 Physcomitrella patens miR1053-3p           12      80
ppt-miR1223j MIMAT0005101 Physcomitrella patens miR1223j               12      80
ppt-miR1223i MIMAT0005100 Physcomitrella patens miR1223i               12      80
ppt-miR1223h MIMAT0005099 Physcomitrella patens miR1223h               12      80
ppt-miR1223g MIMAT0005098 Physcomitrella patens miR1223g               12      80
ppt-miR1223f MIMAT0005097 Physcomitrella patens miR1223f               12      80
ppt-miR1223e MIMAT0005096 Physcomitrella patens miR1223e               12      80
ppt-miR1223d MIMAT0005095 Physcomitrella patens miR1223d               12      80
ppt-miR1223c MIMAT0005094 Physcomitrella patens miR1223c               12      80
ppt-miR1223b MIMAT0005093 Physcomitrella patens miR1223b               12      80
hsa-miR-877-5p MIMAT0004949 Homo sapiens miR-877-5p                    12      80
mmu-miR-877-5p MIMAT0004861 Mus musculus miR-877-5p                    12      80
ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a                  12      80
ppt-miR1223a MIMAT0003918 Physcomitrella patens miR1223a               12      80
hsa-miR-618 MIMAT0003287 Homo sapiens miR-618                          12      80
dre-miR-430b-5p MIMAT0031928 Danio rerio miR-430b-5p                   12      80
>hsv1-miR-H4-5p MIMAT0008401 Herpes Simplex miR-H4-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtagagt 7
         |||||||
Sbjct: 2 gtagagt 8
>mmu-miR-676-5p MIMAT0003781 Mus musculus miR-676-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtagagt 7
         |||||||
Sbjct: 7 gtagagt 1
>chi-miR-877-5p MIMAT0036300 Capra hircus miR-877-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>gsa-let-7-3p MIMAT0035261 Gyrodactylus salaris let-7-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 6 gtagag 1
>ppc-miR-8341-5p MIMAT0033227 Pristionchus pacificus miR-8341-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>cel-miR-8195-3p MIMAT0032804 Caenorhabditis elegans miR-8195-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>bbe-miR-4865-3p MIMAT0031688 Branchiostoma belcheri miR-4865-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>stu-miR8026 MIMAT0030927 Solanum tuberosum miR8026
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>stu-miR8005c MIMAT0030897 Solanum tuberosum miR8005c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 3 tagagt 8
>stu-miR8005b-3p MIMAT0030896 Solanum tuberosum miR8005b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 3 tagagt 8
>stu-miR8005b-5p MIMAT0031191 Solanum tuberosum miR8005b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>stu-miR8005a MIMAT0030895 Solanum tuberosum miR8005a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 3 tagagt 8
>mdo-miR-1251-5p MIMAT0028700 Monodelphis domestica miR-1251-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>mdo-miR-7331-2-3p MIMAT0031091 Monodelphis domestica
         miR-7331-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 8 gtagag 3
>mml-miR-1251-5p MIMAT0028242 Macaca mulatta miR-1251-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>sbi-miR437x-5p MIMAT0026406 Sorghum bicolor miR437x-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 1 tagagt 6
>mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
>ddi-miR-7097 MIMAT0028100 Dictyostelium discoideum miR-7097
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 8 gtagag 3
>rno-miR-3102 MIMAT0025051 Rattus norvegicus miR-3102
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 6 gtagag 1
>ppy-miR-4451 MIMAT0024362 Pongo pygmaeus miR-4451
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ggo-miR-877 MIMAT0024155 Gorilla gorilla miR-877
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>bra-miR5714 MIMAT0023011 Brassica rapa miR5714
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
>ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 2 tagagt 7
>mmu-miR-5108 MIMAT0020616 Mus musculus miR-5108
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>hsa-miR-5007-5p MIMAT0021035 Homo sapiens miR-5007-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 1 tagagt 6
>hsa-miR-4684-5p MIMAT0019769 Homo sapiens miR-4684-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 8 gtagag 3
>hsa-miR-4451 MIMAT0018973 Homo sapiens miR-4451
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>csi-miR3946 MIMAT0018449 Citrus sinensis miR3946
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>gma-miR4379 MIMAT0018285 Glycine max miR4379
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 1 tagagt 6
>ppy-miR-1251 MIMAT0016176 Pongo pygmaeus miR-1251
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>ppy-miR-877 MIMAT0016117 Pongo pygmaeus miR-877
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>ppy-miR-618 MIMAT0016060 Pongo pygmaeus miR-618
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
>aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 2 tagagt 7
>mmu-miR-3102-3p.2-3p MIMAT0014935 Mus musculus miR-3102-3p.2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 6 gtagag 1
>mmu-miR-1251-5p MIMAT0014824 Mus musculus miR-1251-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>eca-miR-1461 MIMAT0013071 Equus caballus miR-1461
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 8 gtagag 3
>bta-miR-1251 MIMAT0009963 Bos taurus miR-1251
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>bta-miR-877 MIMAT0009381 Bos taurus miR-877
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>dvi-miR-282-5p MIMAT0008932 Drosophila virilis miR-282-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 6 gtagag 1
>ptr-miR-618 MIMAT0008280 Pan troglodytes miR-618
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
>ptr-miR-1251 MIMAT0007977 Pan troglodytes miR-1251
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>mml-miR-877-5p MIMAT0006521 Macaca mulatta miR-877-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>mml-miR-618 MIMAT0006468 Macaca mulatta miR-618
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
>gga-miR-216c MIMAT0007339 Gallus gallus miR-216c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 8 gtagag 3
>hsa-miR-1251-5p MIMAT0005903 Homo sapiens miR-1251-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 6 tagagt 1
>rno-miR-877 MIMAT0005285 Rattus norvegicus miR-877
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>ppt-miR1053-3p MIMAT0005171 Physcomitrella patens miR1053-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 6 gtagag 1
>ppt-miR1223j MIMAT0005101 Physcomitrella patens miR1223j
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223i MIMAT0005100 Physcomitrella patens miR1223i
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223h MIMAT0005099 Physcomitrella patens miR1223h
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223g MIMAT0005098 Physcomitrella patens miR1223g
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223f MIMAT0005097 Physcomitrella patens miR1223f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223e MIMAT0005096 Physcomitrella patens miR1223e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223d MIMAT0005095 Physcomitrella patens miR1223d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223c MIMAT0005094 Physcomitrella patens miR1223c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>ppt-miR1223b MIMAT0005093 Physcomitrella patens miR1223b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>hsa-miR-877-5p MIMAT0004949 Homo sapiens miR-877-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>mmu-miR-877-5p MIMAT0004861 Mus musculus miR-877-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 1 gtagag 6
>ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 2 tagagt 7
>ppt-miR1223a MIMAT0003918 Physcomitrella patens miR1223a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtagag 6
         ||||||
Sbjct: 3 gtagag 8
>hsa-miR-618 MIMAT0003287 Homo sapiens miR-618
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
>dre-miR-430b-5p MIMAT0031928 Danio rerio miR-430b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagagt 7
         ||||||
Sbjct: 8 tagagt 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 75
Number of extensions: 73
Number of successful extensions: 62
Number of sequences better than 100.0: 62
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 62
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)