BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ttv-twh-t1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-2756 MIMAT0033749 Plutella xylostella miR-2756 14 20
mdo-miR-7373b-3p MIMAT0028803 Monodelphis domestica miR-7373b-3p 14 20
hsa-miR-5690 MIMAT0022482 Homo sapiens miR-5690 14 20
oha-miR-222b-3p MIMAT0036851 Ophiophagus hannah miR-222b-3p 12 80
oha-miR-222a-3p MIMAT0036849 Ophiophagus hannah miR-222a-3p 12 80
oha-miR-221-3p MIMAT0036847 Ophiophagus hannah miR-221-3p 12 80
tch-miR-222-3p MIMAT0036600 Tupaia chinensis miR-222-3p 12 80
tch-miR-221-3p MIMAT0036523 Tupaia chinensis miR-221-3p 12 80
chi-miR-449a-3p MIMAT0036231 Capra hircus miR-449a-3p 12 80
chi-miR-222-3p MIMAT0036070 Capra hircus miR-222-3p 12 80
chi-miR-221-3p MIMAT0036069 Capra hircus miR-221-3p 12 80
dvi-miR-980-3p MIMAT0035596 Drosophila virilis miR-980-3p 12 80
pxy-miR-745 MIMAT0033801 Plutella xylostella miR-745 12 80
ppc-miR-8346-3p MIMAT0033239 Pristionchus pacificus miR-8346-3p 12 80
ppc-miR-8314-3p MIMAT0033164 Pristionchus pacificus miR-8314-3p 12 80
ssa-miR-222b-3p MIMAT0032543 Salmo salar miR-222b-3p 12 80
ssa-miR-222a-3p MIMAT0032541 Salmo salar miR-222a-3p 12 80
ssa-miR-221-5p MIMAT0032539 Salmo salar miR-221-5p 12 80
oar-miR-221 MIMAT0030047 Ovis aries miR-221 12 80
mmu-miR-7688-5p MIMAT0029906 Mus musculus miR-7688-5p 12 80
ipu-miR-221 MIMAT0029476 Ictalurus punctatus miR-221 12 80
oan-miR-7420-5p MIMAT0028990 Ornithorhynchus anatinus miR-7420-5p 12 80
ccr-miR-222 MIMAT0026274 Cyprinus carpio miR-222 12 80
ccr-miR-221 MIMAT0026273 Cyprinus carpio miR-221 12 80
mmu-miR-7085-3p MIMAT0028077 Mus musculus miR-7085-3p 12 80
mmu-miR-6937-5p MIMAT0027774 Mus musculus miR-6937-5p 12 80
gga-miR-222b-3p MIMAT0025618 Gallus gallus miR-222b-3p 12 80
pol-miR-221-3p MIMAT0025449 Paralichthys olivaceus miR-221-3p 12 80
ppe-miR319b MIMAT0027303 Prunus persica miR319b 12 80
ppe-miR6272 MIMAT0027298 Prunus persica miR6272 12 80
ggo-miR-222 MIMAT0024092 Gorilla gorilla miR-222 12 80
ptr-miR-222 MIMAT0024026 Pan troglodytes miR-222 12 80
cgr-miR-222-3p MIMAT0023861 Cricetulus griseus miR-222-3p 12 80
cgr-miR-221-3p MIMAT0023859 Cricetulus griseus miR-221-3p 12 80
gma-miR5782 MIMAT0023187 Glycine max miR5782 12 80
sha-miR-221 MIMAT0022797 Sarcophilus harrisii miR-221 12 80
sha-miR-222 MIMAT0022796 Sarcophilus harrisii miR-222 12 80
ola-miR-222 MIMAT0022531 Oryzias latipes miR-222 12 80
ola-miR-221 MIMAT0022530 Oryzias latipes miR-221 12 80
mmu-miR-5622-3p MIMAT0022372 Mus musculus miR-5622-3p 12 80
aca-miR-222a-3p MIMAT0021892 Anolis carolinensis miR-222a-3p 12 80
aca-miR-221-3p MIMAT0021890 Anolis carolinensis miR-221-3p 12 80
dme-miR-4968-5p MIMAT0020194 Drosophila melanogaster miR-4968-5p 12 80
bfl-miR-4900b MIMAT0020493 Branchiostoma floridae miR-4900b 12 80
bfl-miR-4900a MIMAT0020492 Branchiostoma floridae miR-4900a 12 80
pma-miR-222-3p MIMAT0019534 Petromyzon marinus miR-222-3p 12 80
pma-miR-221 MIMAT0019532 Petromyzon marinus miR-221 12 80
mghv-miR-M1-15 MIMAT0018176 Mouse gammaherpesvirus miR-M1-15 12 80
pab-miR3696 MIMAT0018128 Picea abies miR3696 12 80
cin-miR-4150-5p MIMAT0016753 Ciona intestinalis miR-4150-5p 12 80
ppy-miR-222 MIMAT0015808 Pongo pygmaeus miR-222 12 80
bmo-miR-3263 MIMAT0015447 Bombyx mori miR-3263 12 80
bmo-miR-3244 MIMAT0015426 Bombyx mori miR-3244 12 80
hsa-miR-548v MIMAT0015020 Homo sapiens miR-548v 12 80
tgu-miR-222-3p MIMAT0014514 Taeniopygia guttata miR-222-3p 12 80
tgu-miR-221-3p MIMAT0014512 Taeniopygia guttata miR-221-3p 12 80
cqu-miR-980 MIMAT0014428 Culex quinquefasciatus miR-980 12 80
aae-miR-980-3p MIMAT0014236 Aedes aegypti miR-980-3p 12 80
ssc-miR-222 MIMAT0013942 Sus scrofa miR-222 12 80
eca-miR-222 MIMAT0013204 Equus caballus miR-222 12 80
eca-miR-221 MIMAT0013203 Equus caballus miR-221 12 80
hvt-miR-H14-3p MIMAT0012867 Herpesvirus of miR-H14-3p 12 80
hvt-miR-H12-3p MIMAT0012864 Herpesvirus of miR-H12-3p 12 80
hvt-miR-H9-3p MIMAT0012722 Herpesvirus of miR-H9-3p 12 80
dsi-miR-980-3p MIMAT0012482 Drosophila simulans miR-980-3p 12 80
dps-miR-980-3p MIMAT0012224 Drosophila pseudoobscura miR-980-3p 12 80
dre-miR-222b MIMAT0011303 Danio rerio miR-222b 12 80
cfa-miR-222 MIMAT0009851 Canis familiaris miR-222 12 80
mmu-miR-1928 MIMAT0009391 Mus musculus miR-1928 12 80
ptr-miR-221 MIMAT0008076 Pan troglodytes miR-221 12 80
ssc-miR-221-3p MIMAT0007762 Sus scrofa miR-221-3p 12 80
cfa-miR-221 MIMAT0006757 Canis familiaris miR-221 12 80
mml-miR-449a-3p MIMAT0026876 Macaca mulatta miR-449a-3p 12 80
mml-miR-222-3p MIMAT0006250 Macaca mulatta miR-222-3p 12 80
gga-miR-1730-5p MIMAT0007631 Gallus gallus miR-1730-5p 12 80
oan-miR-221-3p MIMAT0007135 Ornithorhynchus anatinus miR-221-3p 12 80
oan-miR-222a-3p MIMAT0007133 Ornithorhynchus anatinus miR-222a-3p 12 80
oan-miR-222b-3p MIMAT0007057 Ornithorhynchus anatinus miR-222b-3p 12 80
dme-miR-980-3p MIMAT0005496 Drosophila melanogaster miR-980-3p 12 80
ppt-miR895 MIMAT0004366 Physcomitrella patens miR895 12 80
mdo-miR-221-3p MIMAT0004160 Monodelphis domestica miR-221-3p 12 80
mdo-miR-222a MIMAT0004159 Monodelphis domestica miR-222a 12 80
mdo-miR-449a-3p MIMAT0026685 Monodelphis domestica miR-449a-3p 12 80
sme-miR-31b-1-3p MIMAT0011413 Schmidtea mediterranea miR-31b-1-3p 12 80
xtr-miR-221 MIMAT0003700 Xenopus tropicalis miR-221 12 80
xtr-miR-222 MIMAT0003633 Xenopus tropicalis miR-222 12 80
bta-miR-222 MIMAT0003530 Bos taurus miR-222 12 80
bta-miR-221 MIMAT0003529 Bos taurus miR-221 12 80
tni-miR-221 MIMAT0002907 Tetraodon nigroviridis miR-221 12 80
fru-miR-221 MIMAT0002906 Fugu rubripes miR-221 12 80
tni-miR-222 MIMAT0002905 Tetraodon nigroviridis miR-222 12 80
fru-miR-222 MIMAT0002904 Fugu rubripes miR-222 12 80
age-miR-222 MIMAT0002587 Ateles geoffroyi miR-222 12 80
ppa-miR-221 MIMAT0002586 Pan paniscus miR-221 12 80
ppy-miR-221 MIMAT0002585 Pongo pygmaeus miR-221 12 80
ggo-miR-221 MIMAT0002584 Gorilla gorilla miR-221 12 80
mml-miR-221-3p MIMAT0002583 Macaca mulatta miR-221-3p 12 80
rno-miR-449a-3p MIMAT0017181 Rattus norvegicus miR-449a-3p 12 80
mmu-miR-449a-3p MIMAT0017180 Mus musculus miR-449a-3p 12 80
dre-miR-222a-3p MIMAT0001289 Danio rerio miR-222a-3p 12 80
dre-miR-221-3p MIMAT0001288 Danio rerio miR-221-3p 12 80
gga-miR-221-3p MIMAT0001108 Gallus gallus miR-221-3p 12 80
gga-miR-222a MIMAT0001107 Gallus gallus miR-222a 12 80
rno-miR-222-3p MIMAT0000891 Rattus norvegicus miR-222-3p 12 80
rno-miR-221-3p MIMAT0000890 Rattus norvegicus miR-221-3p 12 80
mmu-miR-222-3p MIMAT0000670 Mus musculus miR-222-3p 12 80
mmu-miR-221-3p MIMAT0000669 Mus musculus miR-221-3p 12 80
hsa-miR-222-3p MIMAT0000279 Homo sapiens miR-222-3p 12 80
hsa-miR-221-3p MIMAT0000278 Homo sapiens miR-221-3p 12 80
>pxy-miR-2756 MIMAT0033749 Plutella xylostella miR-2756
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtagctg 7
|||||||
Sbjct: 2 gtagctg 8
>mdo-miR-7373b-3p MIMAT0028803 Monodelphis domestica
miR-7373b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtagctg 7
|||||||
Sbjct: 8 gtagctg 2
>hsa-miR-5690 MIMAT0022482 Homo sapiens miR-5690
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtagctg 7
|||||||
Sbjct: 8 gtagctg 2
>oha-miR-222b-3p MIMAT0036851 Ophiophagus hannah miR-222b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>oha-miR-222a-3p MIMAT0036849 Ophiophagus hannah miR-222a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>oha-miR-221-3p MIMAT0036847 Ophiophagus hannah miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>tch-miR-222-3p MIMAT0036600 Tupaia chinensis miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>tch-miR-221-3p MIMAT0036523 Tupaia chinensis miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>chi-miR-449a-3p MIMAT0036231 Capra hircus miR-449a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 7 tagctg 2
>chi-miR-222-3p MIMAT0036070 Capra hircus miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>chi-miR-221-3p MIMAT0036069 Capra hircus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>dvi-miR-980-3p MIMAT0035596 Drosophila virilis miR-980-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>pxy-miR-745 MIMAT0033801 Plutella xylostella miR-745
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ppc-miR-8346-3p MIMAT0033239 Pristionchus pacificus miR-8346-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ppc-miR-8314-3p MIMAT0033164 Pristionchus pacificus miR-8314-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ssa-miR-222b-3p MIMAT0032543 Salmo salar miR-222b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ssa-miR-222a-3p MIMAT0032541 Salmo salar miR-222a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ssa-miR-221-5p MIMAT0032539 Salmo salar miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>oar-miR-221 MIMAT0030047 Ovis aries miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mmu-miR-7688-5p MIMAT0029906 Mus musculus miR-7688-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ipu-miR-221 MIMAT0029476 Ictalurus punctatus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>oan-miR-7420-5p MIMAT0028990 Ornithorhynchus anatinus
miR-7420-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ccr-miR-222 MIMAT0026274 Cyprinus carpio miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ccr-miR-221 MIMAT0026273 Cyprinus carpio miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mmu-miR-7085-3p MIMAT0028077 Mus musculus miR-7085-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>mmu-miR-6937-5p MIMAT0027774 Mus musculus miR-6937-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>gga-miR-222b-3p MIMAT0025618 Gallus gallus miR-222b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>pol-miR-221-3p MIMAT0025449 Paralichthys olivaceus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ppe-miR319b MIMAT0027303 Prunus persica miR319b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ppe-miR6272 MIMAT0027298 Prunus persica miR6272
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ggo-miR-222 MIMAT0024092 Gorilla gorilla miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ptr-miR-222 MIMAT0024026 Pan troglodytes miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>cgr-miR-222-3p MIMAT0023861 Cricetulus griseus miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>cgr-miR-221-3p MIMAT0023859 Cricetulus griseus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>gma-miR5782 MIMAT0023187 Glycine max miR5782
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>sha-miR-221 MIMAT0022797 Sarcophilus harrisii miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>sha-miR-222 MIMAT0022796 Sarcophilus harrisii miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ola-miR-222 MIMAT0022531 Oryzias latipes miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ola-miR-221 MIMAT0022530 Oryzias latipes miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mmu-miR-5622-3p MIMAT0022372 Mus musculus miR-5622-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 3 tagctg 8
>aca-miR-222a-3p MIMAT0021892 Anolis carolinensis miR-222a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>aca-miR-221-3p MIMAT0021890 Anolis carolinensis miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>dme-miR-4968-5p MIMAT0020194 Drosophila melanogaster
miR-4968-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>bfl-miR-4900b MIMAT0020493 Branchiostoma floridae miR-4900b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>bfl-miR-4900a MIMAT0020492 Branchiostoma floridae miR-4900a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>pma-miR-222-3p MIMAT0019534 Petromyzon marinus miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>pma-miR-221 MIMAT0019532 Petromyzon marinus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mghv-miR-M1-15 MIMAT0018176 Mouse gammaherpesvirus miR-M1-15
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>pab-miR3696 MIMAT0018128 Picea abies miR3696
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 8 gtagct 3
>cin-miR-4150-5p MIMAT0016753 Ciona intestinalis miR-4150-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 8 gtagct 3
>ppy-miR-222 MIMAT0015808 Pongo pygmaeus miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>bmo-miR-3263 MIMAT0015447 Bombyx mori miR-3263
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>bmo-miR-3244 MIMAT0015426 Bombyx mori miR-3244
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>hsa-miR-548v MIMAT0015020 Homo sapiens miR-548v
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>tgu-miR-222-3p MIMAT0014514 Taeniopygia guttata miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>tgu-miR-221-3p MIMAT0014512 Taeniopygia guttata miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>cqu-miR-980 MIMAT0014428 Culex quinquefasciatus miR-980
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>aae-miR-980-3p MIMAT0014236 Aedes aegypti miR-980-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ssc-miR-222 MIMAT0013942 Sus scrofa miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>eca-miR-222 MIMAT0013204 Equus caballus miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>eca-miR-221 MIMAT0013203 Equus caballus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>hvt-miR-H14-3p MIMAT0012867 Herpesvirus of miR-H14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>hvt-miR-H12-3p MIMAT0012864 Herpesvirus of miR-H12-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>hvt-miR-H9-3p MIMAT0012722 Herpesvirus of miR-H9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>dsi-miR-980-3p MIMAT0012482 Drosophila simulans miR-980-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>dps-miR-980-3p MIMAT0012224 Drosophila pseudoobscura miR-980-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>dre-miR-222b MIMAT0011303 Danio rerio miR-222b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>cfa-miR-222 MIMAT0009851 Canis familiaris miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mmu-miR-1928 MIMAT0009391 Mus musculus miR-1928
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ptr-miR-221 MIMAT0008076 Pan troglodytes miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ssc-miR-221-3p MIMAT0007762 Sus scrofa miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>cfa-miR-221 MIMAT0006757 Canis familiaris miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mml-miR-449a-3p MIMAT0026876 Macaca mulatta miR-449a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>mml-miR-222-3p MIMAT0006250 Macaca mulatta miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>gga-miR-1730-5p MIMAT0007631 Gallus gallus miR-1730-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>oan-miR-221-3p MIMAT0007135 Ornithorhynchus anatinus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>oan-miR-222a-3p MIMAT0007133 Ornithorhynchus anatinus
miR-222a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>oan-miR-222b-3p MIMAT0007057 Ornithorhynchus anatinus
miR-222b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>dme-miR-980-3p MIMAT0005496 Drosophila melanogaster miR-980-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagctg 7
||||||
Sbjct: 1 tagctg 6
>ppt-miR895 MIMAT0004366 Physcomitrella patens miR895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtagct 6
||||||
Sbjct: 1 gtagct 6
>mdo-miR-221-3p MIMAT0004160 Monodelphis domestica miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mdo-miR-222a MIMAT0004159 Monodelphis domestica miR-222a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mdo-miR-449a-3p MIMAT0026685 Monodelphis domestica miR-449a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>sme-miR-31b-1-3p MIMAT0011413 Schmidtea mediterranea
miR-31b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>xtr-miR-221 MIMAT0003700 Xenopus tropicalis miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>xtr-miR-222 MIMAT0003633 Xenopus tropicalis miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>bta-miR-222 MIMAT0003530 Bos taurus miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>bta-miR-221 MIMAT0003529 Bos taurus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>tni-miR-221 MIMAT0002907 Tetraodon nigroviridis miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>fru-miR-221 MIMAT0002906 Fugu rubripes miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>tni-miR-222 MIMAT0002905 Tetraodon nigroviridis miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>fru-miR-222 MIMAT0002904 Fugu rubripes miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>age-miR-222 MIMAT0002587 Ateles geoffroyi miR-222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ppa-miR-221 MIMAT0002586 Pan paniscus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ppy-miR-221 MIMAT0002585 Pongo pygmaeus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>ggo-miR-221 MIMAT0002584 Gorilla gorilla miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mml-miR-221-3p MIMAT0002583 Macaca mulatta miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>rno-miR-449a-3p MIMAT0017181 Rattus norvegicus miR-449a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>mmu-miR-449a-3p MIMAT0017180 Mus musculus miR-449a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagctg 7
||||||
Sbjct: 6 tagctg 1
>dre-miR-222a-3p MIMAT0001289 Danio rerio miR-222a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>dre-miR-221-3p MIMAT0001288 Danio rerio miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>gga-miR-221-3p MIMAT0001108 Gallus gallus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>gga-miR-222a MIMAT0001107 Gallus gallus miR-222a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>rno-miR-222-3p MIMAT0000891 Rattus norvegicus miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>rno-miR-221-3p MIMAT0000890 Rattus norvegicus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mmu-miR-222-3p MIMAT0000670 Mus musculus miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>mmu-miR-221-3p MIMAT0000669 Mus musculus miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>hsa-miR-222-3p MIMAT0000279 Homo sapiens miR-222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
>hsa-miR-221-3p MIMAT0000278 Homo sapiens miR-221-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtagct 6
||||||
Sbjct: 6 gtagct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 118
Number of extensions: 115
Number of successful extensions: 109
Number of sequences better than 100.0: 109
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 109
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
