BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8265-3p MIMAT0033015 Pristionchus pacificus miR-8265-3p 14 20
cpa-miR8147 MIMAT0031844 Carica papaya miR8147 14 20
chi-miR-374b-3p MIMAT0036183 Capra hircus miR-374b-3p 12 80
chi-miR-374a-3p MIMAT0036181 Capra hircus miR-374a-3p 12 80
nve-miR-9442 MIMAT0035403 Nematostella vectensis miR-9442 12 80
efu-miR-9237c MIMAT0034840 Eptesicus fuscus miR-9237c 12 80
atr-miR828 MIMAT0033948 Amborella trichopoda miR828 12 80
str-miR-8379b-5p MIMAT0033469 Strongyloides ratti miR-8379b-5p 12 80
ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p 12 80
aja-miR-3074 MIMAT0031145 Artibeus jamaicensis miR-3074 12 80
gga-miR-6669-5p MIMAT0025770 Gallus gallus miR-6669-5p 12 80
hsa-miR-6506-3p MIMAT0025469 Homo sapiens miR-6506-3p 12 80
ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470 12 80
ggo-miR-374a MIMAT0024169 Gorilla gorilla miR-374a 12 80
cgr-miR-374-3p MIMAT0023940 Cricetulus griseus miR-374-3p 12 80
rno-miR-3074 MIMAT0017815 Rattus norvegicus miR-3074 12 80
bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216 12 80
hsa-miR-3161 MIMAT0015035 Homo sapiens miR-3161 12 80
hsa-miR-3074-3p MIMAT0015027 Homo sapiens miR-3074-3p 12 80
mmu-miR-3074-1-3p MIMAT0014857 Mus musculus miR-3074-1-3p 12 80
ssc-miR-374b-3p MIMAT0017378 Sus scrofa miR-374b-3p 12 80
ssc-miR-374a-3p MIMAT0013914 Sus scrofa miR-374a-3p 12 80
mtr-miR2620 MIMAT0013340 Medicago truncatula miR2620 12 80
bta-miR-2439-3p MIMAT0012014 Bos taurus miR-2439-3p 12 80
mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199 12 80
osa-miR2095-5p MIMAT0010054 Oryza sativa miR2095-5p 12 80
tca-miR-2c-5p MIMAT0019093 Tribolium castaneum miR-2c-5p 12 80
mml-miR-374a-3p MIMAT0026859 Macaca mulatta miR-374a-3p 12 80
mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p 12 80
dme-miR-992-5p MIMAT0020891 Drosophila melanogaster miR-992-5p 12 80
ppt-miR1217-5p MIMAT0004830 Physcomitrella patens miR1217-5p 12 80
hsa-miR-374a-3p MIMAT0004688 Homo sapiens miR-374a-3p 12 80
>ppc-miR-8265-3p MIMAT0033015 Pristionchus pacificus miR-8265-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtatcag 7
|||||||
Sbjct: 8 gtatcag 2
>cpa-miR8147 MIMAT0031844 Carica papaya miR8147
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtatcag 7
|||||||
Sbjct: 8 gtatcag 2
>chi-miR-374b-3p MIMAT0036183 Capra hircus miR-374b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>chi-miR-374a-3p MIMAT0036181 Capra hircus miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>nve-miR-9442 MIMAT0035403 Nematostella vectensis miR-9442
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>efu-miR-9237c MIMAT0034840 Eptesicus fuscus miR-9237c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 1 tatcag 6
>atr-miR828 MIMAT0033948 Amborella trichopoda miR828
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtatca 6
||||||
Sbjct: 6 gtatca 1
>str-miR-8379b-5p MIMAT0033469 Strongyloides ratti miR-8379b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtatca 6
||||||
Sbjct: 6 gtatca 1
>ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 1 tatcag 6
>aja-miR-3074 MIMAT0031145 Artibeus jamaicensis miR-3074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>gga-miR-6669-5p MIMAT0025770 Gallus gallus miR-6669-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtatca 6
||||||
Sbjct: 8 gtatca 3
>hsa-miR-6506-3p MIMAT0025469 Homo sapiens miR-6506-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtatca 6
||||||
Sbjct: 3 gtatca 8
>ptc-miR6470 MIMAT0025209 Populus trichocarpa miR6470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatcag 7
||||||
Sbjct: 8 tatcag 3
>ggo-miR-374a MIMAT0024169 Gorilla gorilla miR-374a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>cgr-miR-374-3p MIMAT0023940 Cricetulus griseus miR-374-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>rno-miR-3074 MIMAT0017815 Rattus norvegicus miR-3074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 1 tatcag 6
>hsa-miR-3161 MIMAT0015035 Homo sapiens miR-3161
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatcag 7
||||||
Sbjct: 6 tatcag 1
>hsa-miR-3074-3p MIMAT0015027 Homo sapiens miR-3074-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>mmu-miR-3074-1-3p MIMAT0014857 Mus musculus miR-3074-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>ssc-miR-374b-3p MIMAT0017378 Sus scrofa miR-374b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>ssc-miR-374a-3p MIMAT0013914 Sus scrofa miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>mtr-miR2620 MIMAT0013340 Medicago truncatula miR2620
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatcag 7
||||||
Sbjct: 8 tatcag 3
>bta-miR-2439-3p MIMAT0012014 Bos taurus miR-2439-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 1 tatcag 6
>mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtatca 6
||||||
Sbjct: 6 gtatca 1
>osa-miR2095-5p MIMAT0010054 Oryza sativa miR2095-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatcag 7
||||||
Sbjct: 6 tatcag 1
>tca-miR-2c-5p MIMAT0019093 Tribolium castaneum miR-2c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>mml-miR-374a-3p MIMAT0026859 Macaca mulatta miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
>mdo-miR-1547-5p MIMAT0006147 Monodelphis domestica miR-1547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 1 tatcag 6
>dme-miR-992-5p MIMAT0020891 Drosophila melanogaster miR-992-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtatca 6
||||||
Sbjct: 3 gtatca 8
>ppt-miR1217-5p MIMAT0004830 Physcomitrella patens miR1217-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtatca 6
||||||
Sbjct: 3 gtatca 8
>hsa-miR-374a-3p MIMAT0004688 Homo sapiens miR-374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatcag 7
||||||
Sbjct: 3 tatcag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 53
Number of successful extensions: 32
Number of sequences better than 100.0: 32
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 32
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
