BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d22-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D22-3p MIMAT0028199 Duck enteritis miR-D22-3p 16 6.9
eca-miR-9038 MIMAT0034580 Equus caballus miR-9038 14 27
stu-miR8011a-5p MIMAT0031195 Solanum tuberosum miR8011a-5p 14 27
lva-miR-2004-3p MIMAT0032225 Lytechinus variegatus miR-2004-3p 14 27
pmi-miR-2004-3p MIMAT0032177 Patiria miniata miR-2004-3p 14 27
mdo-miR-7398h-5p MIMAT0028932 Monodelphis domestica miR-7398h-5p 14 27
hsa-miR-6818-5p MIMAT0027536 Homo sapiens miR-6818-5p 14 27
hsa-miR-6808-3p MIMAT0027517 Homo sapiens miR-6808-3p 14 27
ggo-miR-377 MIMAT0024201 Gorilla gorilla miR-377 14 27
oar-miR-377-3p MIMAT0019322 Ovis aries miR-377-3p 14 27
pab-miR3708 MIMAT0018140 Picea abies miR3708 14 27
cin-miR-4117-5p MIMAT0016708 Ciona intestinalis miR-4117-5p 14 27
cin-miR-4108-5p MIMAT0016695 Ciona intestinalis miR-4108-5p 14 27
ppy-miR-377 MIMAT0015867 Pongo pygmaeus miR-377 14 27
eca-miR-377 MIMAT0013146 Equus caballus miR-377 14 27
bmo-miR-2835 MIMAT0013749 Bombyx mori miR-2835 14 27
dre-miR-2188-3p MIMAT0011310 Danio rerio miR-2188-3p 14 27
spu-miR-2004 MIMAT0009745 Strongylocentrotus purpuratus miR-2004 14 27
bta-miR-377 MIMAT0009304 Bos taurus miR-377 14 27
ptr-miR-377 MIMAT0008129 Pan troglodytes miR-377 14 27
mml-miR-377-3p MIMAT0006306 Macaca mulatta miR-377-3p 14 27
gga-miR-122b MIMAT0007719 Gallus gallus miR-122b 14 27
mmu-miR-377-3p MIMAT0000741 Mus musculus miR-377-3p 14 27
hsa-miR-377-3p MIMAT0000730 Homo sapiens miR-377-3p 14 27
>dev-miR-D22-3p MIMAT0028199 Duck enteritis miR-D22-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtcacaca 8
||||||||
Sbjct: 1 gtcacaca 8
>eca-miR-9038 MIMAT0034580 Equus caballus miR-9038
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 1 tcacaca 7
>stu-miR8011a-5p MIMAT0031195 Solanum tuberosum miR8011a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacaca 8
|||||||
Sbjct: 8 tcacaca 2
>lva-miR-2004-3p MIMAT0032225 Lytechinus variegatus miR-2004-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 1 tcacaca 7
>pmi-miR-2004-3p MIMAT0032177 Patiria miniata miR-2004-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 1 tcacaca 7
>mdo-miR-7398h-5p MIMAT0028932 Monodelphis domestica
miR-7398h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacaca 8
|||||||
Sbjct: 7 tcacaca 1
>hsa-miR-6818-5p MIMAT0027536 Homo sapiens miR-6818-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacaca 8
|||||||
Sbjct: 8 tcacaca 2
>hsa-miR-6808-3p MIMAT0027517 Homo sapiens miR-6808-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcacac 7
|||||||
Sbjct: 7 gtcacac 1
>ggo-miR-377 MIMAT0024201 Gorilla gorilla miR-377
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>oar-miR-377-3p MIMAT0019322 Ovis aries miR-377-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>pab-miR3708 MIMAT0018140 Picea abies miR3708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 1 tcacaca 7
>cin-miR-4117-5p MIMAT0016708 Ciona intestinalis miR-4117-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacaca 8
|||||||
Sbjct: 7 tcacaca 1
>cin-miR-4108-5p MIMAT0016695 Ciona intestinalis miR-4108-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacaca 8
|||||||
Sbjct: 7 tcacaca 1
>ppy-miR-377 MIMAT0015867 Pongo pygmaeus miR-377
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>eca-miR-377 MIMAT0013146 Equus caballus miR-377
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>bmo-miR-2835 MIMAT0013749 Bombyx mori miR-2835
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 1 tcacaca 7
>dre-miR-2188-3p MIMAT0011310 Danio rerio miR-2188-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacaca 8
|||||||
Sbjct: 8 tcacaca 2
>spu-miR-2004 MIMAT0009745 Strongylocentrotus purpuratus
miR-2004
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 1 tcacaca 7
>bta-miR-377 MIMAT0009304 Bos taurus miR-377
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>ptr-miR-377 MIMAT0008129 Pan troglodytes miR-377
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>mml-miR-377-3p MIMAT0006306 Macaca mulatta miR-377-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>gga-miR-122b MIMAT0007719 Gallus gallus miR-122b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcacac 7
|||||||
Sbjct: 8 gtcacac 2
>mmu-miR-377-3p MIMAT0000741 Mus musculus miR-377-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
>hsa-miR-377-3p MIMAT0000730 Homo sapiens miR-377-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacaca 8
|||||||
Sbjct: 2 tcacaca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 263
Number of extensions: 238
Number of successful extensions: 194
Number of sequences better than 100.0: 24
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
