BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h5-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p 16 6.9
mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p 16 6.9
hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p 16 6.9
oha-miR-301a-5p MIMAT0036884 Ophiophagus hannah miR-301a-5p 14 27
oha-miR-301b-5p MIMAT0036882 Ophiophagus hannah miR-301b-5p 14 27
chi-miR-301a-5p MIMAT0036118 Capra hircus miR-301a-5p 14 27
ppc-miR-8329-5p MIMAT0033202 Pristionchus pacificus miR-8329-5p 14 27
ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p 14 27
mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p 14 27
dev-miR-D6-3p MIMAT0028176 Duck enteritis miR-D6-3p 14 27
ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p 14 27
cgr-miR-301a-5p MIMAT0023890 Cricetulus griseus miR-301a-5p 14 27
ola-miR-301a-5p MIMAT0022620 Oryzias latipes miR-301a-5p 14 27
ola-miR-301b-5p MIMAT0022610 Oryzias latipes miR-301b-5p 14 27
aca-miR-301b-5p MIMAT0021917 Anolis carolinensis miR-301b-5p 14 27
aca-miR-301a-5p MIMAT0021915 Anolis carolinensis miR-301a-5p 14 27
hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p 14 27
hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921 14 27
bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239 14 27
tgu-miR-301-5p MIMAT0017391 Taeniopygia guttata miR-301-5p 14 27
mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896 14 27
gga-miR-301b-5p MIMAT0007741 Gallus gallus miR-301b-5p 14 27
gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b 14 27
oan-miR-301-5p MIMAT0006909 Ornithorhynchus anatinus miR-301-5p 14 27
rno-miR-301b-5p MIMAT0017300 Rattus norvegicus miR-301b-5p 14 27
hsa-miR-301b-5p MIMAT0032026 Homo sapiens miR-301b-5p 14 27
mmu-miR-301b-5p MIMAT0017232 Mus musculus miR-301b-5p 14 27
dre-miR-301c-5p MIMAT0031991 Danio rerio miR-301c-5p 14 27
hsa-miR-301a-5p MIMAT0022696 Homo sapiens miR-301a-5p 14 27
rno-miR-301a-5p MIMAT0017026 Rattus norvegicus miR-301a-5p 14 27
mmu-miR-301a-5p MIMAT0017008 Mus musculus miR-301a-5p 14 27
>mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtcagaga 8
||||||||
Sbjct: 8 gtcagaga 1
>mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtcagaga 8
||||||||
Sbjct: 8 gtcagaga 1
>hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtcagaga 8
||||||||
Sbjct: 1 gtcagaga 8
>oha-miR-301a-5p MIMAT0036884 Ophiophagus hannah miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>oha-miR-301b-5p MIMAT0036882 Ophiophagus hannah miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>chi-miR-301a-5p MIMAT0036118 Capra hircus miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>ppc-miR-8329-5p MIMAT0033202 Pristionchus pacificus miR-8329-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 7 gtcagag 1
>mdo-miR-7326-5p MIMAT0028654 Monodelphis domestica miR-7326-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcagaga 8
|||||||
Sbjct: 1 tcagaga 7
>dev-miR-D6-3p MIMAT0028176 Duck enteritis miR-D6-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcagag 7
|||||||
Sbjct: 1 gtcagag 7
>ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcagaga 8
|||||||
Sbjct: 7 tcagaga 1
>cgr-miR-301a-5p MIMAT0023890 Cricetulus griseus miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>ola-miR-301a-5p MIMAT0022620 Oryzias latipes miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>ola-miR-301b-5p MIMAT0022610 Oryzias latipes miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>aca-miR-301b-5p MIMAT0021917 Anolis carolinensis miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>aca-miR-301a-5p MIMAT0021915 Anolis carolinensis miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcagaga 8
|||||||
Sbjct: 7 tcagaga 1
>hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcagaga 8
|||||||
Sbjct: 7 tcagaga 1
>bmo-miR-3239 MIMAT0015422 Bombyx mori miR-3239
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcagaga 8
|||||||
Sbjct: 1 tcagaga 7
>tgu-miR-301-5p MIMAT0017391 Taeniopygia guttata miR-301-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>mmu-miR-1896 MIMAT0007873 Mus musculus miR-1896
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcagaga 8
|||||||
Sbjct: 8 tcagaga 2
>gga-miR-301b-5p MIMAT0007741 Gallus gallus miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>gga-miR-1756b MIMAT0007712 Gallus gallus miR-1756b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcagaga 8
|||||||
Sbjct: 8 tcagaga 2
>oan-miR-301-5p MIMAT0006909 Ornithorhynchus anatinus miR-301-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>rno-miR-301b-5p MIMAT0017300 Rattus norvegicus miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>hsa-miR-301b-5p MIMAT0032026 Homo sapiens miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>mmu-miR-301b-5p MIMAT0017232 Mus musculus miR-301b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>dre-miR-301c-5p MIMAT0031991 Danio rerio miR-301c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>hsa-miR-301a-5p MIMAT0022696 Homo sapiens miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>rno-miR-301a-5p MIMAT0017026 Rattus norvegicus miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
>mmu-miR-301a-5p MIMAT0017008 Mus musculus miR-301a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcagag 7
|||||||
Sbjct: 8 gtcagag 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 180
Number of extensions: 146
Number of successful extensions: 127
Number of sequences better than 100.0: 31
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 31
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
