BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d6-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8329-5p MIMAT0033202 Pristionchus pacificus miR-8329-5p        16   6.9  
dev-miR-D6-3p MIMAT0028176 Duck enteritis miR-D6-3p                    16   6.9  
oha-miR-301a-5p MIMAT0036884 Ophiophagus hannah miR-301a-5p            14      27
oha-miR-301b-5p MIMAT0036882 Ophiophagus hannah miR-301b-5p            14      27
chi-miR-301a-5p MIMAT0036118 Capra hircus miR-301a-5p                  14      27
ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p                   14      27
mmu-miR-7668-5p MIMAT0029842 Mus musculus miR-7668-5p                  14      27
mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p                14      27
mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p                  14      27
pde-miR1311 MIMAT0025348 Pinus densata miR1311                         14      27
cgr-miR-301a-5p MIMAT0023890 Cricetulus griseus miR-301a-5p            14      27
ola-miR-301a-5p MIMAT0022620 Oryzias latipes miR-301a-5p               14      27
ola-miR-301b-5p MIMAT0022610 Oryzias latipes miR-301b-5p               14      27
aca-miR-301b-5p MIMAT0021917 Anolis carolinensis miR-301b-5p           14      27
aca-miR-301a-5p MIMAT0021915 Anolis carolinensis miR-301a-5p           14      27
hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p                  14      27
pab-miR1311 MIMAT0018162 Picea abies miR1311                           14      27
ath-miR3434-3p MIMAT0017738 Arabidopsis thaliana miR3434-3p            14      27
aly-miR3442-3p MIMAT0017718 Arabidopsis lyrata miR3442-3p              14      27
tgu-miR-301-5p MIMAT0017391 Taeniopygia guttata miR-301-5p             14      27
osa-miR2090 MIMAT0010045 Oryza sativa miR2090                          14      27
pta-miR1311 MIMAT0009128 Pinus taeda miR1311                           14      27
hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p                   14      27
gga-miR-301b-5p MIMAT0007741 Gallus gallus miR-301b-5p                 14      27
oan-miR-301-5p MIMAT0006909 Ornithorhynchus anatinus miR-301-5p        14      27
rno-miR-301b-5p MIMAT0017300 Rattus norvegicus miR-301b-5p             14      27
hsa-miR-301b-5p MIMAT0032026 Homo sapiens miR-301b-5p                  14      27
mmu-miR-301b-5p MIMAT0017232 Mus musculus miR-301b-5p                  14      27
dre-miR-301c-5p MIMAT0031991 Danio rerio miR-301c-5p                   14      27
hsa-miR-301a-5p MIMAT0022696 Homo sapiens miR-301a-5p                  14      27
rno-miR-301a-5p MIMAT0017026 Rattus norvegicus miR-301a-5p             14      27
mmu-miR-301a-5p MIMAT0017008 Mus musculus miR-301a-5p                  14      27
>ppc-miR-8329-5p MIMAT0033202 Pristionchus pacificus miR-8329-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtcagagt 8
         ||||||||
Sbjct: 8 gtcagagt 1
>dev-miR-D6-3p MIMAT0028176 Duck enteritis miR-D6-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gtcagagt 8
         ||||||||
Sbjct: 1 gtcagagt 8
>oha-miR-301a-5p MIMAT0036884 Ophiophagus hannah miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>oha-miR-301b-5p MIMAT0036882 Ophiophagus hannah miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>chi-miR-301a-5p MIMAT0036118 Capra hircus miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>ssa-miR-301d-5p MIMAT0032598 Salmo salar miR-301d-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 7 gtcagag 1
>mmu-miR-7668-5p MIMAT0029842 Mus musculus miR-7668-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 8 tcagagt 2
>mml-miR-7205-3p MIMAT0028377 Macaca mulatta miR-7205-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>mmu-miR-6952-3p MIMAT0027805 Mus musculus miR-6952-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>pde-miR1311 MIMAT0025348 Pinus densata miR1311
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 1 tcagagt 7
>cgr-miR-301a-5p MIMAT0023890 Cricetulus griseus miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>ola-miR-301a-5p MIMAT0022620 Oryzias latipes miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>ola-miR-301b-5p MIMAT0022610 Oryzias latipes miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>aca-miR-301b-5p MIMAT0021917 Anolis carolinensis miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>aca-miR-301a-5p MIMAT0021915 Anolis carolinensis miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 8 tcagagt 2
>pab-miR1311 MIMAT0018162 Picea abies miR1311
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 1 tcagagt 7
>ath-miR3434-3p MIMAT0017738 Arabidopsis thaliana miR3434-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 1 tcagagt 7
>aly-miR3442-3p MIMAT0017718 Arabidopsis lyrata miR3442-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 2 tcagagt 8
>tgu-miR-301-5p MIMAT0017391 Taeniopygia guttata miR-301-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>osa-miR2090 MIMAT0010045 Oryza sativa miR2090
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 8 tcagagt 2
>pta-miR1311 MIMAT0009128 Pinus taeda miR1311
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcagagt 8
         |||||||
Sbjct: 1 tcagagt 7
>hsv1-miR-H5-3p MIMAT0008403 Herpes Simplex miR-H5-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 1 gtcagag 7
>gga-miR-301b-5p MIMAT0007741 Gallus gallus miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>oan-miR-301-5p MIMAT0006909 Ornithorhynchus anatinus miR-301-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>rno-miR-301b-5p MIMAT0017300 Rattus norvegicus miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>hsa-miR-301b-5p MIMAT0032026 Homo sapiens miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>mmu-miR-301b-5p MIMAT0017232 Mus musculus miR-301b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>dre-miR-301c-5p MIMAT0031991 Danio rerio miR-301c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>hsa-miR-301a-5p MIMAT0022696 Homo sapiens miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>rno-miR-301a-5p MIMAT0017026 Rattus norvegicus miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
>mmu-miR-301a-5p MIMAT0017008 Mus musculus miR-301a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtcagag 7
         |||||||
Sbjct: 8 gtcagag 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 180
Number of extensions: 146
Number of successful extensions: 119
Number of sequences better than 100.0: 32
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 32
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)