BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D5-5p MIMAT0028174 Duck enteritis miR-D5-5p 14 20
osa-miR1877 MIMAT0007834 Oryza sativa miR1877 14 20
ata-miR9772b-5p MIMAT0037154 Aegilops tauschii miR9772b-5p 12 80
ata-miR9772a-5p MIMAT0037106 Aegilops tauschii miR9772a-5p 12 80
tae-miR9772 MIMAT0036982 Triticum aestivum miR9772 12 80
oha-miR-143-3p MIMAT0036724 Ophiophagus hannah miR-143-3p 12 80
tch-miR-143-3p MIMAT0036476 Tupaia chinensis miR-143-3p 12 80
chi-miR-143-3p MIMAT0035964 Capra hircus miR-143-3p 12 80
bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p 12 80
sly-miR167b-3p MIMAT0035458 Solanum lycopersicum miR167b-3p 12 80
efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286 12 80
eca-miR-9070 MIMAT0034615 Equus caballus miR-9070 12 80
gra-miR167c MIMAT0034167 Gossypium raimondii miR167c 12 80
gra-miR8691 MIMAT0034064 Gossypium raimondii miR8691 12 80
sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p 12 80
ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p 12 80
ssa-miR-143-3p MIMAT0032366 Salmo salar miR-143-3p 12 80
ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p 12 80
ppe-miR827 MIMAT0031516 Prunus persica miR827 12 80
stu-miR827-3p MIMAT0031273 Solanum tuberosum miR827-3p 12 80
stu-miR5304-3p MIMAT0031236 Solanum tuberosum miR5304-3p 12 80
ptc-miR7828 MIMAT0030388 Populus trichocarpa miR7828 12 80
oar-miR-143 MIMAT0030032 Ovis aries miR-143 12 80
cbn-miR-64j MIMAT0029698 Caenorhabditis brenneri miR-64j 12 80
ipu-miR-143 MIMAT0029420 Ictalurus punctatus miR-143 12 80
aja-miR-143 MIMAT0031147 Artibeus jamaicensis miR-143 12 80
mes-miR827 MIMAT0029302 Manihot esculenta miR827 12 80
gga-miR-7449-5p MIMAT0029052 Gallus gallus miR-7449-5p 12 80
mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p 12 80
ccr-miR-143 MIMAT0026224 Cyprinus carpio miR-143 12 80
mdm-miR827 MIMAT0026028 Malus domestica miR827 12 80
mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p 12 80
mmu-miR-6938-3p MIMAT0027777 Mus musculus miR-6938-3p 12 80
hsa-miR-6744-5p MIMAT0027389 Homo sapiens miR-6744-5p 12 80
gga-miR-6632-5p MIMAT0025728 Gallus gallus miR-6632-5p 12 80
gga-miR-6595-5p MIMAT0025689 Gallus gallus miR-6595-5p 12 80
sma-miR-2d-5p MIMAT0032135 Schistosoma mansoni miR-2d-5p 12 80
nta-miR827 MIMAT0024725 Nicotiana tabacum miR827 12 80
cgr-miR-143 MIMAT0023772 Cricetulus griseus miR-143 12 80
hsa-miR-6088 MIMAT0023713 Homo sapiens miR-6088 12 80
hco-miR-5971 MIMAT0023478 Haemonchus contortus miR-5971 12 80
osa-miR5792 MIMAT0023259 Oryza sativa miR5792 12 80
ola-miR-143 MIMAT0022668 Oryzias latipes miR-143 12 80
aca-miR-5435b-3p MIMAT0022090 Anolis carolinensis miR-5435b-3p 12 80
aca-miR-143-3p MIMAT0021770 Anolis carolinensis miR-143-3p 12 80
ssp-miR827 MIMAT0020279 Saccharum sp. miR827 12 80
bdi-miR827-3p MIMAT0020703 Brachypodium distachyon miR827-3p 12 80
gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p 12 80
dme-miR-4942-3p MIMAT0020150 Drosophila melanogaster miR-4942-3p 12 80
tcc-miR827 MIMAT0020449 Theobroma cacao miR827 12 80
hsa-miR-1245b-3p MIMAT0019951 Homo sapiens miR-1245b-3p 12 80
hsa-miR-4770 MIMAT0019924 Homo sapiens miR-4770 12 80
pma-miR-143-3p MIMAT0019473 Petromyzon marinus miR-143-3p 12 80
csi-miR827 MIMAT0018485 Citrus sinensis miR827 12 80
tca-miR-309a-5p MIMAT0018750 Tribolium castaneum miR-309a-5p 12 80
cin-miR-4186-5p MIMAT0016804 Ciona intestinalis miR-4186-5p 12 80
cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p 12 80
cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p 12 80
sja-miR-2d-5p MIMAT0016278 Schistosoma japonicum miR-2d-5p 12 80
ath-miR774b-5p MIMAT0017739 Arabidopsis thaliana miR774b-5p 12 80
aly-miR774b-5p MIMAT0017699 Arabidopsis lyrata miR774b-5p 12 80
aly-miR827-3p MIMAT0017608 Arabidopsis lyrata miR827-3p 12 80
aly-miR167d-3p MIMAT0017480 Arabidopsis lyrata miR167d-3p 12 80
bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221 12 80
ghr-miR827c MIMAT0014343 Gossypium hirsutum miR827c 12 80
ghr-miR827b MIMAT0014342 Gossypium hirsutum miR827b 12 80
ghr-miR827a MIMAT0014341 Gossypium hirsutum miR827a 12 80
rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus miR-rL1... 12 80
zma-miR827-3p MIMAT0014031 Zea mays miR827-3p 12 80
ssc-miR-143-3p MIMAT0013879 Sus scrofa miR-143-3p 12 80
eca-miR-143 MIMAT0013063 Equus caballus miR-143 12 80
dsi-miR-959 MIMAT0012508 Drosophila simulans miR-959 12 80
dps-miR-959-3p MIMAT0012258 Drosophila pseudoobscura miR-959-3p 12 80
cel-miR-2209b-3p MIMAT0011454 Caenorhabditis elegans miR-2209b-3p 12 80
sbi-miR821e MIMAT0011389 Sorghum bicolor miR821e 12 80
sbi-miR821d MIMAT0011388 Sorghum bicolor miR821d 12 80
sbi-miR821c MIMAT0011387 Sorghum bicolor miR821c 12 80
sbi-miR821a MIMAT0011385 Sorghum bicolor miR821a 12 80
osa-miR827 MIMAT0009981 Oryza sativa miR827 12 80
mmu-miR-1934-3p MIMAT0017341 Mus musculus miR-1934-3p 12 80
bta-miR-143 MIMAT0009233 Bos taurus miR-143 12 80
ath-miR1886.2 MIMAT0012129 Arabidopsis thaliana miR1886.2 12 80
cfa-miR-143 MIMAT0006682 Canis familiaris miR-143 12 80
mml-miR-143-3p MIMAT0006201 Macaca mulatta miR-143-3p 12 80
gga-miR-1721 MIMAT0007619 Gallus gallus miR-1721 12 80
gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719 12 80
gga-miR-1710 MIMAT0007605 Gallus gallus miR-1710 12 80
ptc-miR827 MIMAT0006003 Populus trichocarpa miR827 12 80
oan-miR-1419d-3p MIMAT0007254 Ornithorhynchus anatinus miR-1419d-3p 12 80
oan-miR-143-3p MIMAT0007144 Ornithorhynchus anatinus miR-143-3p 12 80
oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371 12 80
dme-miR-959-3p MIMAT0005473 Drosophila melanogaster miR-959-3p 12 80
ath-miR827 MIMAT0004243 Arabidopsis thaliana miR827 12 80
mdo-miR-143-3p MIMAT0004113 Monodelphis domestica miR-143-3p 12 80
osa-miR821c MIMAT0004084 Oryza sativa miR821c 12 80
osa-miR821b MIMAT0004083 Oryza sativa miR821b 12 80
osa-miR821a MIMAT0004082 Oryza sativa miR821a 12 80
xtr-miR-143 MIMAT0003686 Xenopus tropicalis miR-143 12 80
ppa-miR-143 MIMAT0002261 Pan paniscus miR-143 12 80
lla-miR-143 MIMAT0002260 Lagothrix lagotricha miR-143 12 80
ppy-miR-143 MIMAT0002259 Pongo pygmaeus miR-143 12 80
ggo-miR-143 MIMAT0002258 Gorilla gorilla miR-143 12 80
ptr-miR-143 MIMAT0002257 Pan troglodytes miR-143 12 80
dre-miR-143 MIMAT0001840 Danio rerio miR-143 12 80
ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414 12 80
rno-miR-143-3p MIMAT0000849 Rattus norvegicus miR-143-3p 12 80
hsa-miR-143-3p MIMAT0000435 Homo sapiens miR-143-3p 12 80
mmu-miR-143-3p MIMAT0000247 Mus musculus miR-143-3p 12 80
>dev-miR-D5-5p MIMAT0028174 Duck enteritis miR-D5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatct 7
|||||||
Sbjct: 2 gtcatct 8
>osa-miR1877 MIMAT0007834 Oryza sativa miR1877
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcatct 7
|||||||
Sbjct: 7 gtcatct 1
>ata-miR9772b-5p MIMAT0037154 Aegilops tauschii miR9772b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ata-miR9772a-5p MIMAT0037106 Aegilops tauschii miR9772a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>tae-miR9772 MIMAT0036982 Triticum aestivum miR9772
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>oha-miR-143-3p MIMAT0036724 Ophiophagus hannah miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>tch-miR-143-3p MIMAT0036476 Tupaia chinensis miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>chi-miR-143-3p MIMAT0035964 Capra hircus miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 3 tcatct 8
>sly-miR167b-3p MIMAT0035458 Solanum lycopersicum miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 3 tcatct 8
>eca-miR-9070 MIMAT0034615 Equus caballus miR-9070
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gra-miR167c MIMAT0034167 Gossypium raimondii miR167c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gra-miR8691 MIMAT0034064 Gossypium raimondii miR8691
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 6 tcatct 1
>sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 1 tcatct 6
>ssa-miR-143-3p MIMAT0032366 Salmo salar miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 1 tcatct 6
>ppe-miR827 MIMAT0031516 Prunus persica miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>stu-miR827-3p MIMAT0031273 Solanum tuberosum miR827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>stu-miR5304-3p MIMAT0031236 Solanum tuberosum miR5304-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 6 tcatct 1
>ptc-miR7828 MIMAT0030388 Populus trichocarpa miR7828
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 6 gtcatc 1
>oar-miR-143 MIMAT0030032 Ovis aries miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>cbn-miR-64j MIMAT0029698 Caenorhabditis brenneri miR-64j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 6 gtcatc 1
>ipu-miR-143 MIMAT0029420 Ictalurus punctatus miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>aja-miR-143 MIMAT0031147 Artibeus jamaicensis miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mes-miR827 MIMAT0029302 Manihot esculenta miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gga-miR-7449-5p MIMAT0029052 Gallus gallus miR-7449-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ccr-miR-143 MIMAT0026224 Cyprinus carpio miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mdm-miR827 MIMAT0026028 Malus domestica miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 1 tcatct 6
>mmu-miR-6938-3p MIMAT0027777 Mus musculus miR-6938-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 1 tcatct 6
>hsa-miR-6744-5p MIMAT0027389 Homo sapiens miR-6744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 8 gtcatc 3
>gga-miR-6632-5p MIMAT0025728 Gallus gallus miR-6632-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gga-miR-6595-5p MIMAT0025689 Gallus gallus miR-6595-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>sma-miR-2d-5p MIMAT0032135 Schistosoma mansoni miR-2d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 1 gtcatc 6
>nta-miR827 MIMAT0024725 Nicotiana tabacum miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>cgr-miR-143 MIMAT0023772 Cricetulus griseus miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>hsa-miR-6088 MIMAT0023713 Homo sapiens miR-6088
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>hco-miR-5971 MIMAT0023478 Haemonchus contortus miR-5971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>osa-miR5792 MIMAT0023259 Oryza sativa miR5792
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 6 gtcatc 1
>ola-miR-143 MIMAT0022668 Oryzias latipes miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>aca-miR-5435b-3p MIMAT0022090 Anolis carolinensis miR-5435b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 6 gtcatc 1
>aca-miR-143-3p MIMAT0021770 Anolis carolinensis miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ssp-miR827 MIMAT0020279 Saccharum sp. miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>bdi-miR827-3p MIMAT0020703 Brachypodium distachyon miR827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 3 tcatct 8
>dme-miR-4942-3p MIMAT0020150 Drosophila melanogaster
miR-4942-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 8 gtcatc 3
>tcc-miR827 MIMAT0020449 Theobroma cacao miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>hsa-miR-1245b-3p MIMAT0019951 Homo sapiens miR-1245b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>hsa-miR-4770 MIMAT0019924 Homo sapiens miR-4770
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>pma-miR-143-3p MIMAT0019473 Petromyzon marinus miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>csi-miR827 MIMAT0018485 Citrus sinensis miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>tca-miR-309a-5p MIMAT0018750 Tribolium castaneum miR-309a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 6 tcatct 1
>cin-miR-4186-5p MIMAT0016804 Ciona intestinalis miR-4186-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 7 tcatct 2
>cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 3 tcatct 8
>sja-miR-2d-5p MIMAT0016278 Schistosoma japonicum miR-2d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 1 gtcatc 6
>ath-miR774b-5p MIMAT0017739 Arabidopsis thaliana miR774b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>aly-miR774b-5p MIMAT0017699 Arabidopsis lyrata miR774b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>aly-miR827-3p MIMAT0017608 Arabidopsis lyrata miR827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>aly-miR167d-3p MIMAT0017480 Arabidopsis lyrata miR167d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 3 tcatct 8
>ghr-miR827c MIMAT0014343 Gossypium hirsutum miR827c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ghr-miR827b MIMAT0014342 Gossypium hirsutum miR827b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ghr-miR827a MIMAT0014341 Gossypium hirsutum miR827a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus
miR-rL1-18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 7 tcatct 2
>zma-miR827-3p MIMAT0014031 Zea mays miR827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ssc-miR-143-3p MIMAT0013879 Sus scrofa miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>eca-miR-143 MIMAT0013063 Equus caballus miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>dsi-miR-959 MIMAT0012508 Drosophila simulans miR-959
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>dps-miR-959-3p MIMAT0012258 Drosophila pseudoobscura miR-959-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>cel-miR-2209b-3p MIMAT0011454 Caenorhabditis elegans
miR-2209b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>sbi-miR821e MIMAT0011389 Sorghum bicolor miR821e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>sbi-miR821d MIMAT0011388 Sorghum bicolor miR821d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>sbi-miR821c MIMAT0011387 Sorghum bicolor miR821c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>sbi-miR821a MIMAT0011385 Sorghum bicolor miR821a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>osa-miR827 MIMAT0009981 Oryza sativa miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mmu-miR-1934-3p MIMAT0017341 Mus musculus miR-1934-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatc 6
||||||
Sbjct: 8 gtcatc 3
>bta-miR-143 MIMAT0009233 Bos taurus miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ath-miR1886.2 MIMAT0012129 Arabidopsis thaliana miR1886.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>cfa-miR-143 MIMAT0006682 Canis familiaris miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mml-miR-143-3p MIMAT0006201 Macaca mulatta miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gga-miR-1721 MIMAT0007619 Gallus gallus miR-1721
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>gga-miR-1710 MIMAT0007605 Gallus gallus miR-1710
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 1 tcatct 6
>ptc-miR827 MIMAT0006003 Populus trichocarpa miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>oan-miR-1419d-3p MIMAT0007254 Ornithorhynchus anatinus
miR-1419d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>oan-miR-143-3p MIMAT0007144 Ornithorhynchus anatinus miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 7 tcatct 2
>dme-miR-959-3p MIMAT0005473 Drosophila melanogaster miR-959-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>ath-miR827 MIMAT0004243 Arabidopsis thaliana miR827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mdo-miR-143-3p MIMAT0004113 Monodelphis domestica miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>osa-miR821c MIMAT0004084 Oryza sativa miR821c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>osa-miR821b MIMAT0004083 Oryza sativa miR821b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>osa-miR821a MIMAT0004082 Oryza sativa miR821a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatc 6
||||||
Sbjct: 3 gtcatc 8
>xtr-miR-143 MIMAT0003686 Xenopus tropicalis miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ppa-miR-143 MIMAT0002261 Pan paniscus miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>lla-miR-143 MIMAT0002260 Lagothrix lagotricha miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ppy-miR-143 MIMAT0002259 Pongo pygmaeus miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ggo-miR-143 MIMAT0002258 Gorilla gorilla miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ptr-miR-143 MIMAT0002257 Pan troglodytes miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>dre-miR-143 MIMAT0001840 Danio rerio miR-143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatct 7
||||||
Sbjct: 1 tcatct 6
>rno-miR-143-3p MIMAT0000849 Rattus norvegicus miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>hsa-miR-143-3p MIMAT0000435 Homo sapiens miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
>mmu-miR-143-3p MIMAT0000247 Mus musculus miR-143-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatct 7
||||||
Sbjct: 8 tcatct 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 124
Number of extensions: 122
Number of successful extensions: 108
Number of sequences better than 100.0: 108
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 108
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
