BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h3-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-281-3p MIMAT0035269 Gyrodactylus salaris miR-281-3p 14 20
eca-miR-9179 MIMAT0034759 Equus caballus miR-9179 14 20
pxy-miR-281 MIMAT0033804 Plutella xylostella miR-281 14 20
sma-miR-281-3p MIMAT0033593 Schistosoma mansoni miR-281-3p 14 20
str-miR-47-3p MIMAT0033405 Strongyloides ratti miR-47-3p 14 20
ppc-miR-8214-3p MIMAT0032859 Pristionchus pacificus miR-8214-3p 14 20
bbe-miR-281-3p MIMAT0031661 Branchiostoma belcheri miR-281-3p 14 20
prd-miR-46-3p MIMAT0030509 Panagrellus redivivus miR-46-3p 14 20
cbn-miR-47 MIMAT0029744 Caenorhabditis brenneri miR-47 14 20
cbn-miR-46 MIMAT0029743 Caenorhabditis brenneri miR-46 14 20
hco-miR-46 MIMAT0023327 Haemonchus contortus miR-46 14 20
tur-miR-281-3p MIMAT0023047 Tetranychus urticae miR-281-3p 14 20
asu-miR-46-3p MIMAT0021458 Ascaris suum miR-46-3p 14 20
ath-miR5022 MIMAT0020527 Arabidopsis thaliana miR5022 14 20
pma-miR-281a MIMAT0019535 Petromyzon marinus miR-281a 14 20
nlo-miR-281 MIMAT0018415 Nasonia longicornis miR-281 14 20
ngi-miR-281 MIMAT0018388 Nasonia giraulti miR-281 14 20
nvi-miR-281 MIMAT0015658 Nasonia vitripennis miR-281 14 20
cqu-miR-281-3p MIMAT0014359 Culex quinquefasciatus miR-281-3p 14 20
aae-miR-281-3p MIMAT0014232 Aedes aegypti miR-281-3p 14 20
api-miR-281 MIMAT0014134 Acyrthosiphon pisum miR-281 14 20
bma-miR-281 MIMAT0014123 Brugia malayi miR-281 14 20
hvt-miR-H3-5p MIMAT0012712 Herpesvirus of miR-H3-5p 14 20
dpu-miR-281 MIMAT0012655 Daphnia pulex miR-281 14 20
ppc-miR-46 MIMAT0011655 Pristionchus pacificus miR-46 14 20
crm-miR-46-3p MIMAT0011598 Caenorhabditis remanei miR-46-3p 14 20
crm-miR-47 MIMAT0011542 Caenorhabditis remanei miR-47 14 20
lmi-miR-281-3p MIMAT0010141 Locusta migratoria miR-281-3p 14 20
sko-miR-281 MIMAT0009641 Saccoglossus kowalevskii miR-281 14 20
lgi-miR-281-3p MIMAT0009595 Lottia gigantea miR-281-3p 14 20
cte-miR-281 MIMAT0009540 Capitella teleta miR-281 14 20
bfl-miR-281 MIMAT0009500 Branchiostoma floridae miR-281 14 20
mmu-miR-1933-5p MIMAT0009396 Mus musculus miR-1933-5p 14 20
dya-miR-281-3p MIMAT0009061 Drosophila yakuba miR-281-3p 14 20
dwi-miR-281-3p MIMAT0008995 Drosophila willistoni miR-281-3p 14 20
dvi-miR-281-3p MIMAT0008927 Drosophila virilis miR-281-3p 14 20
dsi-miR-281-3p MIMAT0008906 Drosophila simulans miR-281-3p 14 20
dse-miR-281-3p MIMAT0008783 Drosophila sechellia miR-281-3p 14 20
dpe-miR-281-3p MIMAT0008728 Drosophila persimilis miR-281-3p 14 20
dmo-miR-281-3p MIMAT0008642 Drosophila mojavensis miR-281-3p 14 20
dgr-miR-281-3p MIMAT0008588 Drosophila grimshawi miR-281-3p 14 20
der-miR-281-3p MIMAT0008502 Drosophila erecta miR-281-3p 14 20
dan-miR-281-3p MIMAT0008429 Drosophila ananassae miR-281-3p 14 20
tca-miR-281-3p MIMAT0008385 Tribolium castaneum miR-281-3p 14 20
csa-miR-281 MIMAT0006138 Ciona savignyi miR-281 14 20
cin-miR-281-3p MIMAT0006114 Ciona intestinalis miR-281-3p 14 20
cin-let-7b-3p MIMAT0015249 Ciona intestinalis let-7b-3p 14 20
odi-miR-281 MIMAT0006085 Oikopleura dioica miR-281 14 20
smo-miR1111 MIMAT0005268 Selaginella moellendorffii miR1111 14 20
sme-miR-281-3p MIMAT0004013 Schmidtea mediterranea miR-281-3p 14 20
aga-miR-281 MIMAT0001513 Anopheles gambiae miR-281 14 20
ame-miR-281 MIMAT0001483 Apis mellifera miR-281 14 20
dps-miR-281 MIMAT0001245 Drosophila pseudoobscura miR-281 14 20
cbr-miR-47 MIMAT0000472 Caenorhabditis briggsae miR-47 14 20
cbr-miR-46 MIMAT0000471 Caenorhabditis briggsae miR-46 14 20
dme-miR-281-3p MIMAT0000345 Drosophila melanogaster miR-281-3p 14 20
cel-miR-47-3p MIMAT0000018 Caenorhabditis elegans miR-47-3p 14 20
cel-miR-46-3p MIMAT0000017 Caenorhabditis elegans miR-46-3p 14 20
ata-miR167d-3p MIMAT0037233 Aegilops tauschii miR167d-3p 12 80
ata-miR167b-3p MIMAT0037175 Aegilops tauschii miR167b-3p 12 80
eca-miR-8936 MIMAT0034465 Equus caballus miR-8936 12 80
gra-miR7492f MIMAT0034249 Gossypium raimondii miR7492f 12 80
gra-miR7494d MIMAT0034168 Gossypium raimondii miR7494d 12 80
gra-miR7492e MIMAT0034115 Gossypium raimondii miR7492e 12 80
esi-miR8623d MIMAT0033968 Ectocarpus siliculosus miR8623d 12 80
esi-miR8623a MIMAT0033960 Ectocarpus siliculosus miR8623a 12 80
ssa-miR-8156-3p MIMAT0032735 Salmo salar miR-8156-3p 12 80
hsa-miR-8060 MIMAT0030987 Homo sapiens miR-8060 12 80
bdi-miR167e-3p MIMAT0030092 Brachypodium distachyon miR167e-3p 12 80
cbn-miR-64g MIMAT0029707 Caenorhabditis brenneri miR-64g 12 80
cbn-miR-64m MIMAT0029697 Caenorhabditis brenneri miR-64m 12 80
crm-miR-7613 MIMAT0029639 Caenorhabditis remanei miR-7613 12 80
cbr-miR-64c MIMAT0029603 Caenorhabditis briggsae miR-64c 12 80
lja-miR7521 MIMAT0029336 Lotus japonicus miR7521 12 80
mdo-miR-7388a-3p MIMAT0028869 Monodelphis domestica miR-7388a-3p 12 80
mdo-miR-7343-5p MIMAT0028696 Monodelphis domestica miR-7343-5p 12 80
mmu-miR-6910-3p MIMAT0027721 Mus musculus miR-6910-3p 12 80
hsa-miR-6797-3p MIMAT0027495 Homo sapiens miR-6797-3p 12 80
gga-miR-6576-5p MIMAT0025659 Gallus gallus miR-6576-5p 12 80
mse-miR-281 MIMAT0024446 Manduca sexta miR-281 12 80
hsa-miR-6076 MIMAT0023701 Homo sapiens miR-6076 12 80
sly-miR6023 MIMAT0023592 Solanum lycopersicum miR6023 12 80
stu-miR6023 MIMAT0023591 Solanum tuberosum miR6023 12 80
gma-miR5678 MIMAT0022466 Glycine max miR5678 12 80
mtr-miR5219 MIMAT0021177 Medicago truncatula miR5219 12 80
hsa-miR-4757-3p MIMAT0019902 Homo sapiens miR-4757-3p 12 80
ame-miR-3754 MIMAT0018524 Apis mellifera miR-3754 12 80
cin-miR-4192-3p MIMAT0016810 Ciona intestinalis miR-4192-3p 12 80
aly-miR842-3p MIMAT0017628 Arabidopsis lyrata miR842-3p 12 80
aly-miR167c-3p MIMAT0017478 Arabidopsis lyrata miR167c-3p 12 80
bmo-miR-3324 MIMAT0015511 Bombyx mori miR-3324 12 80
bmo-miR-3282 MIMAT0015468 Bombyx mori miR-3282 12 80
hsa-miR-2681-3p MIMAT0013516 Homo sapiens miR-2681-3p 12 80
mtr-miR2646b MIMAT0013416 Medicago truncatula miR2646b 12 80
mtr-miR2646a MIMAT0013415 Medicago truncatula miR2646a 12 80
crm-miR-64b-5p MIMAT0011637 Caenorhabditis remanei miR-64b-5p 12 80
crm-miR-66-5p MIMAT0011635 Caenorhabditis remanei miR-66-5p 12 80
cbr-miR-65-5p MIMAT0011484 Caenorhabditis briggsae miR-65-5p 12 80
ath-miR842 MIMAT0004264 Arabidopsis thaliana miR842 12 80
ppt-miR1211-3p MIMAT0004829 Physcomitrella patens miR1211-3p 12 80
mmu-miR-707 MIMAT0003497 Mus musculus miR-707 12 80
cbr-miR-64a MIMAT0001292 Caenorhabditis briggsae miR-64a 12 80
osa-miR167h-3p MIMAT0022874 Oryza sativa miR167h-3p 12 80
cel-miR-66-5p MIMAT0000038 Caenorhabditis elegans miR-66-5p 12 80
>gsa-miR-281-3p MIMAT0035269 Gyrodactylus salaris miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>eca-miR-9179 MIMAT0034759 Equus caballus miR-9179
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 1 gtcatgg 7
>pxy-miR-281 MIMAT0033804 Plutella xylostella miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>sma-miR-281-3p MIMAT0033593 Schistosoma mansoni miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>str-miR-47-3p MIMAT0033405 Strongyloides ratti miR-47-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>ppc-miR-8214-3p MIMAT0032859 Pristionchus pacificus miR-8214-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>bbe-miR-281-3p MIMAT0031661 Branchiostoma belcheri miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>prd-miR-46-3p MIMAT0030509 Panagrellus redivivus miR-46-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cbn-miR-47 MIMAT0029744 Caenorhabditis brenneri miR-47
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cbn-miR-46 MIMAT0029743 Caenorhabditis brenneri miR-46
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>hco-miR-46 MIMAT0023327 Haemonchus contortus miR-46
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>tur-miR-281-3p MIMAT0023047 Tetranychus urticae miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>asu-miR-46-3p MIMAT0021458 Ascaris suum miR-46-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>ath-miR5022 MIMAT0020527 Arabidopsis thaliana miR5022
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 1 gtcatgg 7
>pma-miR-281a MIMAT0019535 Petromyzon marinus miR-281a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>nlo-miR-281 MIMAT0018415 Nasonia longicornis miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>ngi-miR-281 MIMAT0018388 Nasonia giraulti miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 1 gtcatgg 7
>nvi-miR-281 MIMAT0015658 Nasonia vitripennis miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cqu-miR-281-3p MIMAT0014359 Culex quinquefasciatus miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>aae-miR-281-3p MIMAT0014232 Aedes aegypti miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>api-miR-281 MIMAT0014134 Acyrthosiphon pisum miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>bma-miR-281 MIMAT0014123 Brugia malayi miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>hvt-miR-H3-5p MIMAT0012712 Herpesvirus of miR-H3-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dpu-miR-281 MIMAT0012655 Daphnia pulex miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>ppc-miR-46 MIMAT0011655 Pristionchus pacificus miR-46
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>crm-miR-46-3p MIMAT0011598 Caenorhabditis remanei miR-46-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>crm-miR-47 MIMAT0011542 Caenorhabditis remanei miR-47
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>lmi-miR-281-3p MIMAT0010141 Locusta migratoria miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>sko-miR-281 MIMAT0009641 Saccoglossus kowalevskii miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>lgi-miR-281-3p MIMAT0009595 Lottia gigantea miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cte-miR-281 MIMAT0009540 Capitella teleta miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>bfl-miR-281 MIMAT0009500 Branchiostoma floridae miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>mmu-miR-1933-5p MIMAT0009396 Mus musculus miR-1933-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dya-miR-281-3p MIMAT0009061 Drosophila yakuba miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dwi-miR-281-3p MIMAT0008995 Drosophila willistoni miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dvi-miR-281-3p MIMAT0008927 Drosophila virilis miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dsi-miR-281-3p MIMAT0008906 Drosophila simulans miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dse-miR-281-3p MIMAT0008783 Drosophila sechellia miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dpe-miR-281-3p MIMAT0008728 Drosophila persimilis miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dmo-miR-281-3p MIMAT0008642 Drosophila mojavensis miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dgr-miR-281-3p MIMAT0008588 Drosophila grimshawi miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>der-miR-281-3p MIMAT0008502 Drosophila erecta miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dan-miR-281-3p MIMAT0008429 Drosophila ananassae miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>tca-miR-281-3p MIMAT0008385 Tribolium castaneum miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>csa-miR-281 MIMAT0006138 Ciona savignyi miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cin-miR-281-3p MIMAT0006114 Ciona intestinalis miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cin-let-7b-3p MIMAT0015249 Ciona intestinalis let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcatgg 7
|||||||
Sbjct: 8 gtcatgg 2
>odi-miR-281 MIMAT0006085 Oikopleura dioica miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>smo-miR1111 MIMAT0005268 Selaginella moellendorffii miR1111
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcatgg 7
|||||||
Sbjct: 8 gtcatgg 2
>sme-miR-281-3p MIMAT0004013 Schmidtea mediterranea miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>aga-miR-281 MIMAT0001513 Anopheles gambiae miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>ame-miR-281 MIMAT0001483 Apis mellifera miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dps-miR-281 MIMAT0001245 Drosophila pseudoobscura miR-281
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cbr-miR-47 MIMAT0000472 Caenorhabditis briggsae miR-47
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cbr-miR-46 MIMAT0000471 Caenorhabditis briggsae miR-46
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>dme-miR-281-3p MIMAT0000345 Drosophila melanogaster miR-281-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cel-miR-47-3p MIMAT0000018 Caenorhabditis elegans miR-47-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>cel-miR-46-3p MIMAT0000017 Caenorhabditis elegans miR-46-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcatgg 7
|||||||
Sbjct: 2 gtcatgg 8
>ata-miR167d-3p MIMAT0037233 Aegilops tauschii miR167d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>ata-miR167b-3p MIMAT0037175 Aegilops tauschii miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>eca-miR-8936 MIMAT0034465 Equus caballus miR-8936
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>gra-miR7492f MIMAT0034249 Gossypium raimondii miR7492f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 6 tcatgg 1
>gra-miR7494d MIMAT0034168 Gossypium raimondii miR7494d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>gra-miR7492e MIMAT0034115 Gossypium raimondii miR7492e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 6 tcatgg 1
>esi-miR8623d MIMAT0033968 Ectocarpus siliculosus miR8623d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 3 tcatgg 8
>esi-miR8623a MIMAT0033960 Ectocarpus siliculosus miR8623a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 3 tcatgg 8
>ssa-miR-8156-3p MIMAT0032735 Salmo salar miR-8156-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>hsa-miR-8060 MIMAT0030987 Homo sapiens miR-8060
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 6 tcatgg 1
>bdi-miR167e-3p MIMAT0030092 Brachypodium distachyon miR167e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>cbn-miR-64g MIMAT0029707 Caenorhabditis brenneri miR-64g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>cbn-miR-64m MIMAT0029697 Caenorhabditis brenneri miR-64m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>crm-miR-7613 MIMAT0029639 Caenorhabditis remanei miR-7613
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>cbr-miR-64c MIMAT0029603 Caenorhabditis briggsae miR-64c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>lja-miR7521 MIMAT0029336 Lotus japonicus miR7521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>mdo-miR-7388a-3p MIMAT0028869 Monodelphis domestica
miR-7388a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>mdo-miR-7343-5p MIMAT0028696 Monodelphis domestica miR-7343-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>mmu-miR-6910-3p MIMAT0027721 Mus musculus miR-6910-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>hsa-miR-6797-3p MIMAT0027495 Homo sapiens miR-6797-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 8 gtcatg 3
>gga-miR-6576-5p MIMAT0025659 Gallus gallus miR-6576-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>mse-miR-281 MIMAT0024446 Manduca sexta miR-281
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>hsa-miR-6076 MIMAT0023701 Homo sapiens miR-6076
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 8 gtcatg 3
>sly-miR6023 MIMAT0023592 Solanum lycopersicum miR6023
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 8 tcatgg 3
>stu-miR6023 MIMAT0023591 Solanum tuberosum miR6023
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 8 tcatgg 3
>gma-miR5678 MIMAT0022466 Glycine max miR5678
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 8 tcatgg 3
>mtr-miR5219 MIMAT0021177 Medicago truncatula miR5219
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>hsa-miR-4757-3p MIMAT0019902 Homo sapiens miR-4757-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>ame-miR-3754 MIMAT0018524 Apis mellifera miR-3754
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>cin-miR-4192-3p MIMAT0016810 Ciona intestinalis miR-4192-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>aly-miR842-3p MIMAT0017628 Arabidopsis lyrata miR842-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>aly-miR167c-3p MIMAT0017478 Arabidopsis lyrata miR167c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>bmo-miR-3324 MIMAT0015511 Bombyx mori miR-3324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatgg 7
||||||
Sbjct: 7 tcatgg 2
>bmo-miR-3282 MIMAT0015468 Bombyx mori miR-3282
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>hsa-miR-2681-3p MIMAT0013516 Homo sapiens miR-2681-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 3 tcatgg 8
>mtr-miR2646b MIMAT0013416 Medicago truncatula miR2646b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>mtr-miR2646a MIMAT0013415 Medicago truncatula miR2646a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>crm-miR-64b-5p MIMAT0011637 Caenorhabditis remanei miR-64b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>crm-miR-66-5p MIMAT0011635 Caenorhabditis remanei miR-66-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>cbr-miR-65-5p MIMAT0011484 Caenorhabditis briggsae miR-65-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>ath-miR842 MIMAT0004264 Arabidopsis thaliana miR842
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatgg 7
||||||
Sbjct: 1 tcatgg 6
>ppt-miR1211-3p MIMAT0004829 Physcomitrella patens miR1211-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 8 gtcatg 3
>mmu-miR-707 MIMAT0003497 Mus musculus miR-707
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>cbr-miR-64a MIMAT0001292 Caenorhabditis briggsae miR-64a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
>osa-miR167h-3p MIMAT0022874 Oryza sativa miR167h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcatg 6
||||||
Sbjct: 3 gtcatg 8
>cel-miR-66-5p MIMAT0000038 Caenorhabditis elegans miR-66-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcatg 6
||||||
Sbjct: 6 gtcatg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 117
Number of successful extensions: 104
Number of sequences better than 100.0: 104
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 104
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
