BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h14-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7308-5p MIMAT0028614 Monodelphis domestica miR-7308-5p 14 20
hsv1-miR-H14-5p MIMAT0014691 Herpes Simplex miR-H14-5p 14 20
bmo-miR-2798 MIMAT0013702 Bombyx mori miR-2798 14 20
cfa-miR-8873b MIMAT0034395 Canis familiaris miR-8873b 12 80
str-miR-7880y-3p MIMAT0033499 Strongyloides ratti miR-7880y-3p 12 80
str-miR-7880u-3p MIMAT0033407 Strongyloides ratti miR-7880u-3p 12 80
str-miR-7880t-3p MIMAT0033397 Strongyloides ratti miR-7880t-3p 12 80
str-miR-7880s-3p MIMAT0033389 Strongyloides ratti miR-7880s-3p 12 80
str-miR-7880r-3p MIMAT0033387 Strongyloides ratti miR-7880r-3p 12 80
str-miR-7880q-3p MIMAT0033379 Strongyloides ratti miR-7880q-3p 12 80
str-miR-7880o-3p MIMAT0033373 Strongyloides ratti miR-7880o-3p 12 80
str-miR-7880l-3p MIMAT0033363 Strongyloides ratti miR-7880l-3p 12 80
str-miR-7880j-3p MIMAT0033351 Strongyloides ratti miR-7880j-3p 12 80
str-miR-7880i-3p MIMAT0033330 Strongyloides ratti miR-7880i-3p 12 80
str-miR-7880h-3p MIMAT0033328 Strongyloides ratti miR-7880h-3p 12 80
str-miR-7880g-3p MIMAT0033324 Strongyloides ratti miR-7880g-3p 12 80
str-miR-7880e-3p MIMAT0033320 Strongyloides ratti miR-7880e-3p 12 80
str-miR-7880d-3p MIMAT0033316 Strongyloides ratti miR-7880d-3p 12 80
str-miR-7880c-3p MIMAT0033312 Strongyloides ratti miR-7880c-3p 12 80
str-miR-7880b-3p MIMAT0033305 Strongyloides ratti miR-7880b-3p 12 80
str-miR-7880a-3p MIMAT0033299 Strongyloides ratti miR-7880a-3p 12 80
ppc-miR-8316-5p MIMAT0033169 Pristionchus pacificus miR-8316-5p 12 80
prd-miR-7949-3p MIMAT0030769 Panagrellus redivivus miR-7949-3p 12 80
prd-miR-7933-3p MIMAT0030719 Panagrellus redivivus miR-7933-3p 12 80
prd-miR-7929-3p MIMAT0030707 Panagrellus redivivus miR-7929-3p 12 80
prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p 12 80
prd-miR-7880c-3p MIMAT0030591 Panagrellus redivivus miR-7880c-3p 12 80
prd-miR-7880b-3p MIMAT0030585 Panagrellus redivivus miR-7880b-3p 12 80
prd-miR-7880a-3p MIMAT0030519 Panagrellus redivivus miR-7880a-3p 12 80
prd-miR-7869-5p MIMAT0030480 Panagrellus redivivus miR-7869-5p 12 80
osa-miR5540 MIMAT0022176 Oryza sativa miR5540 12 80
bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p 12 80
tca-miR-3880-3p MIMAT0018857 Tribolium castaneum miR-3880-3p 12 80
tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p 12 80
ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734 12 80
hsa-miR-3683 MIMAT0018111 Homo sapiens miR-3683 12 80
vvi-miR3627-5p MIMAT0018017 Vitis vinifera miR3627-5p 12 80
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p 12 80
tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p 12 80
bmo-miR-2843-1-3p MIMAT0013763 Bombyx mori miR-2843-1-3p 12 80
hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p 12 80
gga-miR-1780 MIMAT0007691 Gallus gallus miR-1780 12 80
gga-miR-1634 MIMAT0007507 Gallus gallus miR-1634 12 80
gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p 12 80
tae-miR1136 MIMAT0005371 Triticum aestivum miR1136 12 80
rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus miR-rL1... 12 80
rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3 12 80
zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p 12 80
osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p 12 80
osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p 12 80
>mdo-miR-7308-5p MIMAT0028614 Monodelphis domestica miR-7308-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcgcac 7
|||||||
Sbjct: 8 gtcgcac 2
>hsv1-miR-H14-5p MIMAT0014691 Herpes Simplex miR-H14-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtcgcac 7
|||||||
Sbjct: 2 gtcgcac 8
>bmo-miR-2798 MIMAT0013702 Bombyx mori miR-2798
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtcgcac 7
|||||||
Sbjct: 8 gtcgcac 2
>cfa-miR-8873b MIMAT0034395 Canis familiaris miR-8873b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 6 gtcgca 1
>str-miR-7880y-3p MIMAT0033499 Strongyloides ratti miR-7880y-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880u-3p MIMAT0033407 Strongyloides ratti miR-7880u-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880t-3p MIMAT0033397 Strongyloides ratti miR-7880t-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880s-3p MIMAT0033389 Strongyloides ratti miR-7880s-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880r-3p MIMAT0033387 Strongyloides ratti miR-7880r-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880q-3p MIMAT0033379 Strongyloides ratti miR-7880q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880o-3p MIMAT0033373 Strongyloides ratti miR-7880o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880l-3p MIMAT0033363 Strongyloides ratti miR-7880l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880j-3p MIMAT0033351 Strongyloides ratti miR-7880j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880i-3p MIMAT0033330 Strongyloides ratti miR-7880i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880h-3p MIMAT0033328 Strongyloides ratti miR-7880h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880g-3p MIMAT0033324 Strongyloides ratti miR-7880g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880e-3p MIMAT0033320 Strongyloides ratti miR-7880e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880d-3p MIMAT0033316 Strongyloides ratti miR-7880d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880c-3p MIMAT0033312 Strongyloides ratti miR-7880c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880b-3p MIMAT0033305 Strongyloides ratti miR-7880b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>str-miR-7880a-3p MIMAT0033299 Strongyloides ratti miR-7880a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>ppc-miR-8316-5p MIMAT0033169 Pristionchus pacificus miR-8316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 6 gtcgca 1
>prd-miR-7949-3p MIMAT0030769 Panagrellus redivivus miR-7949-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>prd-miR-7933-3p MIMAT0030719 Panagrellus redivivus miR-7933-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>prd-miR-7929-3p MIMAT0030707 Panagrellus redivivus miR-7929-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 3 tcgcac 8
>prd-miR-7880c-3p MIMAT0030591 Panagrellus redivivus
miR-7880c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>prd-miR-7880b-3p MIMAT0030585 Panagrellus redivivus
miR-7880b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>prd-miR-7880a-3p MIMAT0030519 Panagrellus redivivus
miR-7880a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>prd-miR-7869-5p MIMAT0030480 Panagrellus redivivus miR-7869-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>osa-miR5540 MIMAT0022176 Oryza sativa miR5540
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgcac 7
||||||
Sbjct: 8 tcgcac 3
>bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgcac 7
||||||
Sbjct: 8 tcgcac 3
>tca-miR-3880-3p MIMAT0018857 Tribolium castaneum miR-3880-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 6 gtcgca 1
>tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 3 tcgcac 8
>hsa-miR-3683 MIMAT0018111 Homo sapiens miR-3683
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 6 gtcgca 1
>vvi-miR3627-5p MIMAT0018017 Vitis vinifera miR3627-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcgca 6
||||||
Sbjct: 3 gtcgca 8
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>bmo-miR-2843-1-3p MIMAT0013763 Bombyx mori miR-2843-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>gga-miR-1780 MIMAT0007691 Gallus gallus miR-1780
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 8 gtcgca 3
>gga-miR-1634 MIMAT0007507 Gallus gallus miR-1634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgca 6
||||||
Sbjct: 6 gtcgca 1
>gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>tae-miR1136 MIMAT0005371 Triticum aestivum miR1136
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcgca 6
||||||
Sbjct: 3 gtcgca 8
>rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus
miR-rL1-14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgcac 7
||||||
Sbjct: 1 tcgcac 6
>zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgcac 7
||||||
Sbjct: 8 tcgcac 3
>osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgcac 7
||||||
Sbjct: 8 tcgcac 3
>osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgcac 7
||||||
Sbjct: 8 tcgcac 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 61
Number of extensions: 58
Number of successful extensions: 50
Number of sequences better than 100.0: 50
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
