BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b3rc-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9052 MIMAT0034596 Equus caballus miR-9052 14 20
pde-miR3704a MIMAT0025353 Pinus densata miR3704a 14 20
aly-miR4230 MIMAT0017918 Arabidopsis lyrata miR4230 14 20
rno-miR-678 MIMAT0012857 Rattus norvegicus miR-678 14 20
ppc-miR-2263 MIMAT0011697 Pristionchus pacificus miR-2263 14 20
mmu-miR-678 MIMAT0003452 Mus musculus miR-678 14 20
ame-miR-9872 MIMAT0037276 Apis mellifera miR-9872 12 80
bta-miR-4523 MIMAT0036971 Bos taurus miR-4523 12 80
gsa-miR-9397-3p MIMAT0035341 Gyrodactylus salaris miR-9397-3p 12 80
efu-miR-9341 MIMAT0035109 Eptesicus fuscus miR-9341 12 80
eca-miR-9063 MIMAT0034608 Equus caballus miR-9063 12 80
gra-miR8749 MIMAT0034175 Gossypium raimondii miR8749 12 80
atr-miR166b MIMAT0033916 Amborella trichopoda miR166b 12 80
cel-miR-8212-3p MIMAT0032845 Caenorhabditis elegans miR-8212-3p 12 80
mtr-miR7697-5p MIMAT0029994 Medicago truncatula miR7697-5p 12 80
mmu-miR-7223-3p MIMAT0028415 Mus musculus miR-7223-3p 12 80
mmu-miR-6336 MIMAT0025079 Mus musculus miR-6336 12 80
gma-miR166u MIMAT0024903 Glycine max miR166u 12 80
hco-miR-5978 MIMAT0023488 Haemonchus contortus miR-5978 12 80
gma-miR166k MIMAT0023223 Glycine max miR166k 12 80
bdi-miR166f MIMAT0020658 Brachypodium distachyon miR166f 12 80
gma-miR169h MIMAT0021062 Glycine max miR169h 12 80
gma-miR166h-3p MIMAT0020984 Glycine max miR166h-3p 12 80
hsa-miR-4740-3p MIMAT0019870 Homo sapiens miR-4740-3p 12 80
hsa-miR-4523 MIMAT0019061 Homo sapiens miR-4523 12 80
gma-miR4391 MIMAT0018304 Glycine max miR4391 12 80
tca-miR-3850-3p MIMAT0018755 Tribolium castaneum miR-3850-3p 12 80
hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615 12 80
aly-miR774a-5p.1 MIMAT0017593 Arabidopsis lyrata miR774a-5p.1 12 80
bmo-miR-2731 MIMAT0012608 Bombyx mori miR-2731 12 80
mml-miR-516a-5p MIMAT0006373 Macaca mulatta miR-516a-5p 12 80
cre-miR1147.2 MIMAT0005385 Chlamydomonas reinhardtii miR1147.2 12 80
ath-miR851-5p MIMAT0004273 Arabidopsis thaliana miR851-5p 12 80
cel-miR-243-5p MIMAT0015117 Caenorhabditis elegans miR-243-5p 12 80
>eca-miR-9052 MIMAT0034596 Equus caballus miR-9052
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtctcgg 7
|||||||
Sbjct: 7 gtctcgg 1
>pde-miR3704a MIMAT0025353 Pinus densata miR3704a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 2 gtctcgg 8
>aly-miR4230 MIMAT0017918 Arabidopsis lyrata miR4230
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 2 gtctcgg 8
>rno-miR-678 MIMAT0012857 Rattus norvegicus miR-678
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 1 gtctcgg 7
>ppc-miR-2263 MIMAT0011697 Pristionchus pacificus miR-2263
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 1 gtctcgg 7
>mmu-miR-678 MIMAT0003452 Mus musculus miR-678
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 1 gtctcgg 7
>ame-miR-9872 MIMAT0037276 Apis mellifera miR-9872
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 8 gtctcg 3
>bta-miR-4523 MIMAT0036971 Bos taurus miR-4523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgg 7
||||||
Sbjct: 8 tctcgg 3
>gsa-miR-9397-3p MIMAT0035341 Gyrodactylus salaris miR-9397-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>efu-miR-9341 MIMAT0035109 Eptesicus fuscus miR-9341
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>eca-miR-9063 MIMAT0034608 Equus caballus miR-9063
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgg 7
||||||
Sbjct: 7 tctcgg 2
>gra-miR8749 MIMAT0034175 Gossypium raimondii miR8749
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>atr-miR166b MIMAT0033916 Amborella trichopoda miR166b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>cel-miR-8212-3p MIMAT0032845 Caenorhabditis elegans miR-8212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 8 gtctcg 3
>mtr-miR7697-5p MIMAT0029994 Medicago truncatula miR7697-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgg 7
||||||
Sbjct: 7 tctcgg 2
>mmu-miR-7223-3p MIMAT0028415 Mus musculus miR-7223-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtctcg 6
||||||
Sbjct: 1 gtctcg 6
>mmu-miR-6336 MIMAT0025079 Mus musculus miR-6336
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>gma-miR166u MIMAT0024903 Glycine max miR166u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>hco-miR-5978 MIMAT0023488 Haemonchus contortus miR-5978
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 8 gtctcg 3
>gma-miR166k MIMAT0023223 Glycine max miR166k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>bdi-miR166f MIMAT0020658 Brachypodium distachyon miR166f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>gma-miR169h MIMAT0021062 Glycine max miR169h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 8 gtctcg 3
>gma-miR166h-3p MIMAT0020984 Glycine max miR166h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>hsa-miR-4740-3p MIMAT0019870 Homo sapiens miR-4740-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgg 7
||||||
Sbjct: 8 tctcgg 3
>hsa-miR-4523 MIMAT0019061 Homo sapiens miR-4523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgg 7
||||||
Sbjct: 8 tctcgg 3
>gma-miR4391 MIMAT0018304 Glycine max miR4391
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>tca-miR-3850-3p MIMAT0018755 Tribolium castaneum miR-3850-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 8 gtctcg 3
>hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 3 tctcgg 8
>aly-miR774a-5p.1 MIMAT0017593 Arabidopsis lyrata miR774a-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 6 gtctcg 1
>bmo-miR-2731 MIMAT0012608 Bombyx mori miR-2731
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtctcg 6
||||||
Sbjct: 8 gtctcg 3
>mml-miR-516a-5p MIMAT0006373 Macaca mulatta miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtctcg 6
||||||
Sbjct: 1 gtctcg 6
>cre-miR1147.2 MIMAT0005385 Chlamydomonas reinhardtii miR1147.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>ath-miR851-5p MIMAT0004273 Arabidopsis thaliana miR851-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 1 tctcgg 6
>cel-miR-243-5p MIMAT0015117 Caenorhabditis elegans miR-243-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgg 7
||||||
Sbjct: 3 tctcgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 38
Number of successful extensions: 34
Number of sequences better than 100.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
