BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b3rc-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9397-3p MIMAT0035341 Gyrodactylus salaris miR-9397-3p 14 27
efu-miR-9341 MIMAT0035109 Eptesicus fuscus miR-9341 14 27
eca-miR-9052 MIMAT0034596 Equus caballus miR-9052 14 27
oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus miR-7425-5p 14 27
pde-miR3704a MIMAT0025353 Pinus densata miR3704a 14 27
gma-miR4391 MIMAT0018304 Glycine max miR4391 14 27
aly-miR4230 MIMAT0017918 Arabidopsis lyrata miR4230 14 27
rno-miR-678 MIMAT0012857 Rattus norvegicus miR-678 14 27
ppc-miR-2263 MIMAT0011697 Pristionchus pacificus miR-2263 14 27
cre-miR1147.2 MIMAT0005385 Chlamydomonas reinhardtii miR1147.2 14 27
mmu-miR-719 MIMAT0003465 Mus musculus miR-719 14 27
mmu-miR-678 MIMAT0003452 Mus musculus miR-678 14 27
>gsa-miR-9397-3p MIMAT0035341 Gyrodactylus salaris miR-9397-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcggc 8
|||||||
Sbjct: 1 tctcggc 7
>efu-miR-9341 MIMAT0035109 Eptesicus fuscus miR-9341
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcggc 8
|||||||
Sbjct: 1 tctcggc 7
>eca-miR-9052 MIMAT0034596 Equus caballus miR-9052
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtctcgg 7
|||||||
Sbjct: 7 gtctcgg 1
>oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus
miR-7425-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcggc 8
|||||||
Sbjct: 2 tctcggc 8
>pde-miR3704a MIMAT0025353 Pinus densata miR3704a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 2 gtctcgg 8
>gma-miR4391 MIMAT0018304 Glycine max miR4391
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcggc 8
|||||||
Sbjct: 1 tctcggc 7
>aly-miR4230 MIMAT0017918 Arabidopsis lyrata miR4230
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 2 gtctcgg 8
>rno-miR-678 MIMAT0012857 Rattus norvegicus miR-678
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 1 gtctcgg 7
>ppc-miR-2263 MIMAT0011697 Pristionchus pacificus miR-2263
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 1 gtctcgg 7
>cre-miR1147.2 MIMAT0005385 Chlamydomonas reinhardtii miR1147.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcggc 8
|||||||
Sbjct: 1 tctcggc 7
>mmu-miR-719 MIMAT0003465 Mus musculus miR-719
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcggc 8
|||||||
Sbjct: 2 tctcggc 8
>mmu-miR-678 MIMAT0003452 Mus musculus miR-678
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcgg 7
|||||||
Sbjct: 1 gtctcgg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 80
Number of extensions: 68
Number of successful extensions: 52
Number of sequences better than 100.0: 12
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)