BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-b3rc-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gsa-miR-9397-3p MIMAT0035341 Gyrodactylus salaris miR-9397-3p          14      27
efu-miR-9341 MIMAT0035109 Eptesicus fuscus miR-9341                    14      27
eca-miR-9052 MIMAT0034596 Equus caballus miR-9052                      14      27
oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus miR-7425-5p      14      27
pde-miR3704a MIMAT0025353 Pinus densata miR3704a                       14      27
gma-miR4391 MIMAT0018304 Glycine max miR4391                           14      27
aly-miR4230 MIMAT0017918 Arabidopsis lyrata miR4230                    14      27
rno-miR-678 MIMAT0012857 Rattus norvegicus miR-678                     14      27
ppc-miR-2263 MIMAT0011697 Pristionchus pacificus miR-2263              14      27
cre-miR1147.2 MIMAT0005385 Chlamydomonas reinhardtii miR1147.2         14      27
mmu-miR-719 MIMAT0003465 Mus musculus miR-719                          14      27
mmu-miR-678 MIMAT0003452 Mus musculus miR-678                          14      27
>gsa-miR-9397-3p MIMAT0035341 Gyrodactylus salaris miR-9397-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctcggc 8
         |||||||
Sbjct: 1 tctcggc 7
>efu-miR-9341 MIMAT0035109 Eptesicus fuscus miR-9341
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctcggc 8
         |||||||
Sbjct: 1 tctcggc 7
>eca-miR-9052 MIMAT0034596 Equus caballus miR-9052
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtctcgg 7
         |||||||
Sbjct: 7 gtctcgg 1
>oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus
         miR-7425-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctcggc 8
         |||||||
Sbjct: 2 tctcggc 8
>pde-miR3704a MIMAT0025353 Pinus densata miR3704a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctcgg 7
         |||||||
Sbjct: 2 gtctcgg 8
>gma-miR4391 MIMAT0018304 Glycine max miR4391
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctcggc 8
         |||||||
Sbjct: 1 tctcggc 7
>aly-miR4230 MIMAT0017918 Arabidopsis lyrata miR4230
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctcgg 7
         |||||||
Sbjct: 2 gtctcgg 8
>rno-miR-678 MIMAT0012857 Rattus norvegicus miR-678
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctcgg 7
         |||||||
Sbjct: 1 gtctcgg 7
>ppc-miR-2263 MIMAT0011697 Pristionchus pacificus miR-2263
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctcgg 7
         |||||||
Sbjct: 1 gtctcgg 7
>cre-miR1147.2 MIMAT0005385 Chlamydomonas reinhardtii miR1147.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctcggc 8
         |||||||
Sbjct: 1 tctcggc 7
>mmu-miR-719 MIMAT0003465 Mus musculus miR-719
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctcggc 8
         |||||||
Sbjct: 2 tctcggc 8
>mmu-miR-678 MIMAT0003452 Mus musculus miR-678
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctcgg 7
         |||||||
Sbjct: 1 gtctcgg 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 80
Number of extensions: 68
Number of successful extensions: 52
Number of sequences better than 100.0: 12
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)